Browse Element(s) Details


Os.10817.1.S1_a_at

Description gb:AK071997.1
DB_XREF= gi:32982020
TID=Os.10817.1
CNT=27
FEA=FLmRNA
TIER=FL+Stack
STK=10
UG=Os.10817 (NCBI UniGene Cluster)
UG_TITLE=Subsp. japonica mRNA for auxin response factor 1 (arf1 gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013091N24, full insert sequence.
FL= gb:AK071997.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3211011/11Auxin response factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32100Os.56356.1.S1_at11/1111+18420661..18423855Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g32110Os.10817.3.S1_x_at11/1111+18433620..18440044Auxin response factor 2, putative, expressed
LOC_Os11g32110Os.10817.1.S1_a_at11/1111+18433620..18440044Auxin response factor 2, putative, expressed
LOC_Os11g32119NANA11+18440304..18440553NA
LOC_Os11g32130NANA11+18445802..18446089hypothetical protein
LOC_Os11g32140NANA11+18464466..18469378transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010227biological_processfloral organ abscission
GO:0016481biological_processnegative regulation of transcription
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10817.1.S1_a_at--369--8911Chr11:18434449..18434473 (25 bp)
TGAGAACTGCTAATGCTTTCCCATC
LOC_Os11g32110
Os.10817.1.S1_a_at--389--2551Chr11:18434445..18434469 (25 bp)
AACTGCTAATGCTTTCCCATCTGGT
LOC_Os11g32110
Os.10817.1.S1_a_at--410--2291Chr11:18434273..18434297 (25 bp)
AAATGCATTTCGTAGTGGAGTTAAT
LOC_Os11g32110
Os.10817.1.S1_a_at--570--2291Chr11:18434213..18434237 (25 bp)
AAAGTACCCTATTTGTAGATGGTGC
LOC_Os11g32110
Os.10817.1.S1_a_at--926--7253Chr01:37422284..37422303 (20 bp)
GTCCTTGGTGGTCAAGTTGCACTCT
NONE
Os.10817.1.S1_a_at--256--6671Chr11:18434171..18434195 (25 bp)
GTTGCACTCTTATTTGCTGCAGTTT
LOC_Os11g32110
Os.10817.1.S1_a_at--9--211Chr11:18434160..18434184 (25 bp)
ATTTGCTGCAGTTTTGGTTTTCTAT
LOC_Os11g32110
Os.10817.1.S1_a_at--987--8571Chr11:18434146..18434170 (25 bp)
TGGTTTTCTATTTTGGTGAGGTAAG
LOC_Os11g32110
Os.10817.1.S1_a_at--617--8891Chr11:18434130..18434154 (25 bp)
TGAGGTAAGTTGTCAGCCGCCAGTC
LOC_Os11g32110
Os.10817.1.S1_a_at--189--4531Chr11:18434115..18434139 (25 bp)
GCCGCCAGTCCTACCATATAAATGT
LOC_Os11g32110
Os.10817.1.S1_a_at--1085--9991Chr11:18434081..18434105 (25 bp)
TAGAAAAGTAAGCTCAGCCCTCCCA
LOC_Os11g32110
Target Sequence 
TGAGAACTGCTAATGCTTTCCCATCTGGTAACGTCTTTTGAAGTAACATGGGAGACAAGAACGCNATGCATCGTTATAAG
AAAATGCATTTCGTAGTGGAGTTAATGCTTTTTTTCCCCCTTTGATGTATTGGATAAGCNCAAAGTACCCTATTTGTAGA
TGGTGCTTGTCCTTGGTGGTCAAGTTGCACTCTTATTTGCTGCAGTTTTGGTTTTCTATTTTGGTGAGGTAAGTTGTCAG
CCGCCAGTCCTACCATATAAATGTTGGTATGCGTAGAAAAGTAAGCTCAGCCCTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10817.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis