Browse Element(s) Details


Os.10817.3.S1_x_at

Description gb:AF140228.2
DB_XREF= gi:26251299
TID=Os.10817.3
CNT=15
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.10817 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) putative auxin response factor 1 mRNA, partial cds.
PROD=putative auxin response factor 1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3211011/11Auxin response factor 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g32100Os.56356.1.S1_at11/1111+18420661..18423855Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os11g32110Os.10817.3.S1_x_at11/1111+18433620..18440044Auxin response factor 2, putative, expressed
LOC_Os11g32110Os.10817.1.S1_a_at11/1111+18433620..18440044Auxin response factor 2, putative, expressed
LOC_Os11g32119NANA11+18440304..18440553NA
LOC_Os11g32130NANA11+18445802..18446089hypothetical protein
LOC_Os11g32140NANA11+18464466..18469378transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0009911biological_processpositive regulation of flower development
GO:0010047biological_processfruit dehiscence
GO:0010150biological_processleaf senescence
GO:0010227biological_processfloral organ abscission
GO:0016481biological_processnegative regulation of transcription
GO:0045892biological_processnegative regulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10817.3.S1_x_at--287--8871Chr11:18435658..18435682 (25 bp)
TGATGGGACGCCACAAACACCAGGT
LOC_Os11g32110
Os.10817.3.S1_x_at--186--1731Chr11:18435640..18435664 (25 bp)
ACCAGGTGCTACTGAATGGCGCCGA
LOC_Os11g32110
Os.10817.3.S1_x_at--926--2951Chr11:18435626..18435650 (25 bp)
AATGGCGCCGACCAGATGTAACTGA
LOC_Os11g32110
Os.10817.3.S1_x_at--218--5591Chr11:18435595..18435619 (25 bp)
GAAATGTTCTGATCCTTCTAAGGCC
LOC_Os11g32110
Os.10817.3.S1_x_at--1144--8431Chr11:18435574..18435598 (25 bp)
GGCCATGAAGCCACTTGATACTCCG
LOC_Os11g32110
Os.10817.3.S1_x_at--1018--8831Chr11:18435559..18435583 (25 bp)
TGATACTCCGCAACCAGACTCTGTT
LOC_Os11g32110
Os.10817.3.S1_x_at--24--10011Chr11:18435471..18435493 (22 bp)
TAGAAGCTGCAAGAAGGTCCACAAG
LOC_Os11g32110
Os.10817.3.S1_x_at--194--71Chr11:18434887..18434911 (25 bp)
ATTGCACTTGGCAGGTCTGTGGACC
LOC_Os11g32110
Os.10817.3.S1_x_at--362--6131Chr11:18434776..18434800 (25 bp)
GAGTGGATGGTTGTCTACACTGACA
LOC_Os11g32110
Os.10817.3.S1_x_at--1101--6371Chr11:18434631..18434746 (25 bp)
GATCCCTGGATTGAATTCTGCGACA
LOC_Os11g32110
Os.10817.3.S1_x_at--348--3831Chr11:18434614..18434638 (25 bp)
CTGCGACATGGTTCACAAGATCTTC
LOC_Os11g32110
Target Sequence 
TGATGGGACGCCACAAACACCAGGTGCTACTGAATGGCGCCGACCAGATGTAACTGAAGTAGAGAAATGTTCTGATCCTT
CTAAGGCCATGAAGCCACTTGATACTCCGCAACCAGACTCTGTTCCNGAGAANCCTTCTTCTCAGCAAGCTTCNNNNNNN
NNNNNNNNACGAAACATGTCGTGCAAATCACAAGGTGTNATCAACTAGAAGCTGCAAGAAGGTCCACAAGCAAGGCATTG
CACTTGGCAGGTCTGTGGACCTTACAAAGTTTAATGGCTATGAAGAGTTGATTGCTGAGNTGGATGACATGTTTGATTTC
AANGGTGAACTGAAGGGTCCTAAGAAGGAGTGGATGGTTGTCTACACTGACAACGAAGGTGACATGATGCTAGTTGGGGA
TGATCCCTGGATTGAATTCTGCGACATGGTTCACAAGATCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10817.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis