Browse Element(s) Details


Os.11076.1.S1_at

Description gb:AY029301.1
DB_XREF= gi:13774085
GEN=rab5A
TID=Os.11076.1
CNT=43
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11076 (NCBI UniGene Cluster)
DEF=Oryza sativa small GTP-binding protein (rab5A) mRNA, complete cds.
PROD=small GTP-binding protein
FL= gb:AK066784.1 gb:AY029301.1 gb:AK061116.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4355011/11Ras-related protein RHN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein
LOC_Os12g43540OsAffx.20105.1.S1_at11/1112+26981668..26982581hypothetical protein
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed
LOC_Os12g43564NANA12+26999080..27001360hypothetical protein
LOC_Os12g43570OsAffx.7881.1.S1_at11/1112+27007832..27008575hypothetical protein
LOC_Os12g43580OsAffx.32172.1.S1_s_at11/1112+27012714..27016001expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006499biological_processN-terminal protein myristoylation
GO:0006886biological_processintracellular protein transport
GO:0045022biological_processearly endosome to late endosome transport
GO:0005769cellular_componentearly endosome
GO:0005802cellular_componentGolgi trans face
GO:0010009cellular_componentexternal side of endosome membrane
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11076.1.S1_at--297--4011Chr12:26990358..26990382 (25 bp)
CGATAATGGCTCTTGCTGGTAACAA
LOC_Os12g43550
Os.11076.1.S1_at--1043--5351Chr12:26990954..26990975 (22 bp)
GAAGAGGCAAAGACCTACGCACAAG
LOC_Os12g43550
Os.11076.1.S1_at--984--1831Chr12:26990967..26990991 (25 bp)
ACGCACAAGAGAATGGCCTTTTCTT
LOC_Os12g43550
Os.11076.1.S1_at--1123--8131Chr12:26991203..26991227 (25 bp)
GGACAGCAGGCTCAAGACACACCGG
LOC_Os12g43550
Os.11076.1.S1_at--213--8211Chr12:26991230..26991254 (25 bp)
GGAATGGTTCTCAACCAGAGACCAG
LOC_Os12g43550
Os.11076.1.S1_at--815--9711Chr12:26991240..26991264 (25 bp)
TCAACCAGAGACCAGCTGAGAGGAT
LOC_Os12g43550
Os.11076.1.S1_at--952--3851Chr12:26991255..26991279 (25 bp)
CTGAGAGGATGGTGAGCAGTTCTTC
LOC_Os12g43550
Os.11076.1.S1_at--185--2911Chr12:26991505..26991526 (22 bp)
AAGGTATTTCTCGACACTGAAACAG
LOC_Os12g43550
Os.11076.1.S1_at--574--1491Chr12:26991532..26991556 (25 bp)
AGCAAAGTCTAGTCAGATTCGTTTT
LOC_Os12g43550
Os.11076.1.S1_at--636--6851Chr12:26991557..26991581 (25 bp)
GTTTGCTTCAATTCAGATCATGCAG
LOC_Os12g43550
Os.11076.1.S1_at--793--6431Chr12:26991572..26991596 (25 bp)
GATCATGCAGTGAGCTTGCTTTTTA
LOC_Os12g43550
Target Sequence 
CGATAATGGCTCTTGCTGGTAACAAGGCTGATATGGTAGAGGCGAGGCAGGTGCCAGCAGAAGAGGCAAAGACCTACGCA
CAAGAGAATGGCCTTTTCTTCATGGAAACATCTGCGAAAACNGCGATCAATGTGAACGATGTATTCCACGAGATCGCAAA
GAGATTGCTTCAAGGACAGCAGGCTCAAGACACACCGGCTGGAATGGTTCTCAACCAGAGACCAGCTGAGAGGATGGTGA
GCAGTTCTTCATGCTGCTCATAATTCNAAGTGTGGAGTAGTGNNTACAACTACATAATGCCATGGCCTGAAATCCAGGAG
AAGTGTGTATGCATCAGAGATGCACACAAAGCTTGTAAAGTGGCTGCTGCCATCCCAGCTGCTGTTTCTTATTTTGTCAT
GTTCGTTCTGTAAATGTGAATACTAGGGTGTCGCTGCAGAAATTCAGATGTATTACTACAGTGTATGCTCTTGCTTAAGG
TATTTCTCGACACTGAAACAGAGTAAAGCAAAGTCTAGTCAGATTCGTTTTGTTTGCTTCAATTCAGATCATGCAGTGAG
CTTGCTTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11076.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis