Browse Element(s) Details


Os.11190.1.S1_at

Description gb:AK058995.1
DB_XREF= gi:32969013
TID=Os.11190.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G02, full insert sequence.
FL= gb:AK058995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3300011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32980Os.7576.1.S1_at11/114+19752713..19754760expressed protein
LOC_Os04g32989NANA4+19758111..19758547NA
LOC_Os04g33000Os.11190.1.S1_s_at11/114+19775551..19776204expressed protein
LOC_Os04g33000Os.11190.1.S1_at11/114+19775551..19776204expressed protein
LOC_Os04g33010OsAffx.8572.1.S1_s_at6/114+19783235..19786780transposon protein, putative, Mutator sub-class
LOC_Os04g33010OsAffx.8572.1.S1_at5/114+19783235..19786780transposon protein, putative, Mutator sub-class
LOC_Os04g33020NANA4+19796688..19797248hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11190.1.S1_at--98--9511Chr04:19775647..19775671 (25 bp)
TCTCTCCCAATCGAGGAGGCGGATG
LOC_Os04g33000
Os.11190.1.S1_at--48--911Chr04:19775673..19775697 (25 bp)
AGGCGGCAAGGCGATGCCACTACTC
LOC_Os04g33000
Os.11190.1.S1_at--377--2951Chr04:19775680..19775704 (25 bp)
AAGGCGATGCCACTACTCTCGGAGG
LOC_Os04g33000
Os.11190.1.S1_at--1007--6351Chr04:19775685..19775709 (25 bp)
GATGCCACTACTCTCGGAGGCGAGC
LOC_Os04g33000
Os.11190.1.S1_at--160--3331Chr04:19775690..19775714 (25 bp)
CACTACTCTCGGAGGCGAGCCACGG
LOC_Os04g33000
Os.11190.1.S1_at--1137--7711Chr04:19775808..19775832 (25 bp)
GGGTGGCCGGATCCGACGTCAGCAT
LOC_Os04g33000
Os.11190.1.S1_at--581--7111Chr04:19775825..19775849 (25 bp)
GTCAGCATCTGTTCCCGCGGCGGAT
LOC_Os04g33000
Os.11190.1.S1_at--798--9291Chr04:19775849..19775873 (25 bp)
TCCGCGTTGACAGCGGGAATGGTAC
LOC_Os04g33000
Os.11190.1.S1_at--996--4651Chr04:19775861..19775885 (25 bp)
GCGGGAATGGTACAGCGGCAGCGTA
LOC_Os04g33000
Os.11190.1.S1_at--137--9871Chr04:19775871..19775895 (25 bp)
TACAGCGGCAGCGTAGGTGGGCGCC
LOC_Os04g33000
Os.11190.1.S1_at--843--9251Chr04:19775897..19775921 (25 bp)
TCCTCAGCAAGCTACCGTGGCAGCG
LOC_Os04g33000
Target Sequence 
TCTCTCCCAATCGAGGAGGCGGATGCAGGCGGCAAGGCGATGCCACTACTCTCGGAGGCGAGCCACGGGGTGGCTGGATC
CGGCGTCGGCGGCAGGCGGGGTGGCCGGATCCGGCATCAGCAGCAGACGGGGGTGGCTGGATCCGGCGTCGGCAGCAGGC
GGGGTGGCCGGATCCGACGTCAGCATCTGTTCCCGCGGCGGATCCGCGTTGACAGCGGGAATGGTACAGCGGCAGCGTAG
GTGGGCGCCCTCCTCAGCAAGCTACCGTGGCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11190.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis