Browse Element(s) Details


Os.11190.1.S1_s_at

Description gb:AK058995.1
DB_XREF= gi:32969013
TID=Os.11190.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11190 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-020-G02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-020-G02, full insert sequence.
FL= gb:AK058995.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3300011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32980Os.7576.1.S1_at11/114+19752713..19754760expressed protein
LOC_Os04g32989NANA4+19758111..19758547NA
LOC_Os04g33000Os.11190.1.S1_s_at11/114+19775551..19776204expressed protein
LOC_Os04g33000Os.11190.1.S1_at11/114+19775551..19776204expressed protein
LOC_Os04g33010OsAffx.8572.1.S1_s_at6/114+19783235..19786780transposon protein, putative, Mutator sub-class
LOC_Os04g33010OsAffx.8572.1.S1_at5/114+19783235..19786780transposon protein, putative, Mutator sub-class
LOC_Os04g33020NANA4+19796688..19797248hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11190.1.S1_s_at--462--4331Chr04:19775929..19775953 (25 bp)
CCATCCCCGGTGAGCTACGATAGCA
LOC_Os04g33000
Os.11190.1.S1_s_at--392--9051Chr04:19775968..19775992 (25 bp)
TGCATGGGTGGATCCGGTGACGACA
LOC_Os04g33000
Os.11190.1.S1_s_at--763--4551Chr04:19775994..19776018 (25 bp)
GCGCCATCCTCGGTGAGCTACAGTG
LOC_Os04g33000
Os.11190.1.S1_s_at--792--3531Chr04:19775998..19776022 (25 bp)
CATCCTCGGTGAGCTACAGTGGCGG
LOC_Os04g33000
Os.11190.1.S1_s_at--688--4671Chr04:19776019..19776043 (25 bp)
GCGGGCATGCAATGGCGAAGTTCTC
LOC_Os04g33000
Os.11190.1.S1_s_at--363--8391Chr04:19776032..19776056 (25 bp)
GGCGAAGTTCTCAAATCAGTGATTT
LOC_Os04g33000
Os.11190.1.S1_s_at--235--751Chr04:19776064..19776088 (25 bp)
ATGTTTGTGATTCTGTTCTTGCCTT
LOC_Os04g33000
Os.11190.1.S1_s_at--814--3871Chr04:19776076..19776100 (25 bp)
CTGTTCTTGCCTTGTGATGGTTGAT
LOC_Os04g33000
Os.11190.1.S1_s_at--534--731Chr04:19776099..19776123 (25 bp)
ATGTTGATTCTTGTGGTTCTGTTGT
LOC_Os04g33000
Os.11190.1.S1_s_at--254--10611Chr04:19776115..19776139 (25 bp)
TTCTGTTGTTGATCTTCAATCTAGA
LOC_Os04g33000
Os.11190.1.S1_s_at--688--6651Chr04:19776122..19776146 (25 bp)
GTTGATCTTCAATCTAGATGTGTTG
LOC_Os04g33000
Target Sequence 
CCATCCCCGGTGAGCTACGATAGCAGCGGGGCTCGCACGTGCATGGGTGGATCCGGTGACGACAGGCGCCATCCTCGGTG
AGCTACAGTGGCGGGCATGCAATGGCGAAGTTCTCAAATCAGTGATTTGTATTATATGTTTGTGATTCTGTTCTTGCCTT
GTGATGGTTGATGTTGATTCTTGTGGTTCTGTTGTTGATCTTCAATCTAGATGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11190.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis