Browse Element(s) Details


Os.11405.1.S1_at

Description gb:AK071066.1
DB_XREF= gi:32981089
TID=Os.11405.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11405 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023081B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023081B09, full insert sequence.
FL= gb:AK058994.1 gb:AK071066.1 gb:AK058700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1332011/11Argininosuccinate synthase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g13300OsAffx.31725.1.S1_at11/1112+7417264..7418862Leucine Rich Repeat family protein
LOC_Os12g13300Os.51067.1.S1_x_at2/1112+7417264..7418862Leucine Rich Repeat family protein
LOC_Os12g13310NANA12+7420523..7424739Protein kinase domain containing protein
LOC_Os12g13320Os.11405.1.S1_at11/1112+7427980..7432087Argininosuccinate synthase, chloroplast precursor, putative, expressed
LOC_Os12g13330NANA12+7434390..7436724Zinc knuckle family protein
LOC_Os12g13340Os.7004.1.S1_at11/1112+7438457..7443509expressed protein
LOC_Os12g13350Os.26063.1.S1_at1/1112+7450551..7455232retrotransposon protein, putative, Ty1-copia subclass, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006526biological_processarginine biosynthesis
GO:0004055molecular_functionargininosuccinate synthase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11405.1.S1_at--228--9291Chr12:7431642..7431666 (25 bp)
TCCGTGACTCTCAAGCTGTACAAGG
LOC_Os12g13320
Os.11405.1.S1_at--299--8271Chr12:7431658..7431682 (25 bp)
TGTACAAGGGCTCCGTAAACGTCGC
LOC_Os12g13320
Os.11405.1.S1_at--561--8191Chr12:7431688..7431712 (25 bp)
GGAAGAGCCCATACAGCCTGTACAG
LOC_Os12g13320
Os.11405.1.S1_at--482--7011Chr12:7431707..7431731 (25 bp)
GTACAGGGAAGACATCTCCTCATTT
LOC_Os12g13320
Os.11405.1.S1_at--1150--7631Chr12:7431739..7431763 (25 bp)
GGGAGATCTACAACCAGGCTGATGC
LOC_Os12g13320
Os.11405.1.S1_at--71--931Chr12:7431777..7431801 (25 bp)
AGGCTATATGGTCTCCCTACCAGAG
LOC_Os12g13320
Os.11405.1.S1_at--204--5971Chr12:7431816..7431840 (25 bp)
GAGAAGGGCATCTAAGCCCCTGTTT
LOC_Os12g13320
Os.11405.1.S1_at--1123--1651Chr12:7431830..7431854 (25 bp)
AGCCCCTGTTTTCTGCTTAAAATGT
LOC_Os12g13320
Os.11405.1.S1_at--534--5511Chr12:7431871..7431895 (25 bp)
GAAAATGTAGCACCACCTCATGCAG
LOC_Os12g13320
Os.11405.1.S1_at--647--7851Chr12:7431907..7431931 (25 bp)
GGTAGGCACTGAATACTTTCCGAGT
LOC_Os12g13320
Os.11405.1.S1_at--1112--9771Chr12:7432055..7432079 (25 bp)
TAAGATTGTCTCATGTGGTGCCGTC
LOC_Os12g13320
Target Sequence 
TCCGTGACTCTCAAGCTGTACAAGGGCTCCGTAAACGTCGCGTCCCGGAAGAGCCCATACAGCCTGTACAGGGAAGACAT
CTCCTCATTTGAGAATGGGGAGATCTACAACCAGGCTGATGCTGAAGGGTTCATCAGGCTATATGGTCTCCCTACCAGAG
TCCGGGCAATGCTGGAGAAGGGCATCTAAGCCCCTGTTTTCTGCTTAAAATGTACTTCTGTGCTTTGGAGAAAATGTAGC
ACCACCTCATGCAGTGTTGCCTGCAGGTAGGCACTGAATACTTTCCGAGTTGTATTAGCGTTCGAAANCTTAACTGCCAT
CTCAATTCGATTACAACTTTCGTGAAGTGTTGCATGATCATGTAATGAATAATGGGGTTGTACCTGATTTTGACTTGGTT
GTCTAAATTGCAATAAGATTGTCTCATGTGGTGCCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11405.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis