Browse Element(s) Details


Os.11711.1.S1_at

Description gb:AK099846.1
DB_XREF= gi:32985055
TID=Os.11711.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.11711 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013109F13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013109F13, full insert sequence.
FL= gb:AK066847.1 gb:AK099846.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1788011/11U-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17850NANA12+10230130..10231872retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17860OsAffx.7625.1.S1_at11/1112+10233453..10240131retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g17870OsAffx.7626.1.S1_at11/1112+10246200..10246613hypothetical protein
LOC_Os12g17880Os.11711.1.S1_at11/1112+10251549..10254854U-box domain containing protein, expressed
LOC_Os12g17890OsAffx.25135.2.S1_x_at7/1112+10255645..10256376hypothetical protein
LOC_Os12g17890OsAffx.3516.1.S1_x_at1/1112+10255645..10256376hypothetical protein
LOC_Os12g17900Os.54189.1.S1_at11/1112+10278319..10284123armadillo/beta-catenin repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11711.1.S1_at--23--5331Chr12:10252059..10252083 (25 bp)
GAAGGGAAACCCAACAGGCACACTT
LOC_Os12g17880
Os.11711.1.S1_at--778--8231Chr12:10252043..10252067 (25 bp)
GGCACACTTCAGCAGAGGGTGACAT
LOC_Os12g17880
Os.11711.1.S1_at--1121--2331Chr12:10251980..10252004 (25 bp)
AAAGCAGCTTCAAGCGACCGTGGCT
LOC_Os12g17880
Os.11711.1.S1_at--693--7531Chr12:10251961..10251985 (25 bp)
GTGGCTTGAGTTCTGCCCTTGTTCA
LOC_Os12g17880
Os.11711.1.S1_at--804--4171Chr12:10251946..10251970 (25 bp)
CCCTTGTTCATGCTTTCCAGAATGG
LOC_Os12g17880
Os.11711.1.S1_at--885--7651Chr12:10251922..10251946 (25 bp)
GGGATTCCAGAACACGACGTATCGC
LOC_Os12g17880
Os.11711.1.S1_at--381--9211Chr12:10251868..10251892 (25 bp)
TGCCAACTTTCTCCCAAATCATTGA
LOC_Os12g17880
Os.11711.1.S1_at--230--51Chr12:10251848..10251872 (25 bp)
ATTGATAAGCATCCCTCGAGACGAG
LOC_Os12g17880
Os.11711.1.S1_at--1104--4991Chr12:10251808..10251832 (25 bp)
GCATGGAGCGTTACTTTAGGTCTGA
LOC_Os12g17880
Os.11711.1.S1_at--362--10091Chr12:10251792..10251816 (25 bp)
TAGGTCTGATCGCTAGGCTATGAAA
LOC_Os12g17880
Os.11711.1.S1_at--1138--8911Chr12:10251746..10251770 (25 bp)
TGACCTGCCTATGCCTTATGGACAA
LOC_Os12g17880
Target Sequence 
GAAGGGAAACCCAACAGGCACACTTCAGCAGAGGGTGACATGGGCTGTCGAGAGGATTTTGCGGGCAGAGAACATTGCAA
AAGCAGCTTCAAGCGACCGTGGCTTGAGTTCTGCCCTTGTTCATGCTTTCCAGAATGGGGATTCCAGAACACGACGTATC
GCAGAGGCATCNCTGAAGCACATTAACAAGTTGCCAACTTTCTCCCAAATCATTGATAAGCATCCCTCGAGACGAGGTTC
GTCAATTGGAAGCATGGAGCGTTACTTTAGGTCTGATCGCTAGGCTATGAAATTGTGAAGTAACCGAATGCCATGACCTG
CCTATGCCTTATGGACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11711.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis