Browse Element(s) Details


Os.13534.1.S1_at

Description gb:AU029707
DB_XREF= gi:3762955
DB_XREF=AU029707
CLONE=E31330_6Z
TID=Os.13534.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.13534 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T01623 (A.thaliana) T01623 hypothetical protein F19F24.15 - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4484011/11prenyltransferase, UbiA family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44800OsAffx.24518.2.S1_x_at10/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44800OsAffx.19258.2.S1_x_at3/116+27063210..27066211hAT family dimerisation domain containing protein, expressed
LOC_Os06g44810Os.53397.1.S1_at11/116+27067988..27073409expressed protein
LOC_Os06g44820OsAffx.15926.1.S1_at10/116+27074173..27075641hypothetical protein
LOC_Os06g44830NANA6+27081760..27082020hypothetical protein
LOC_Os06g44840OsAffx.15929.2.S1_s_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840OsAffx.15929.1.S1_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_s_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44849NANA6+27101096..27101387NA
LOC_Os06g44860OsAffx.15930.1.S1_at11/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44860Os.45980.1.S1_s_at1/116+27113989..27115985SBP domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010189biological_processvitamin E biosynthesis
GO:0042362biological_processfat-soluble vitamin biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004659molecular_functionprenyltransferase activity
GO:0010176molecular_functionhomogentisate phytyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13534.1.S1_at--914--8371Chr06:27091505..27091612 (25 bp)
GGCGATTACTCCAGGGACGCAGGTA
LOC_Os06g44840
Os.13534.1.S1_at--189--4631Chr06:27091506..27091613 (25 bp)
GCGATTACTCCAGGGACGCAGGTAG
LOC_Os06g44840
Os.13534.1.S1_at--855--6551Chr06:27091508..27091615 (25 bp)
GATTACTCCAGGGACGCAGGTAGAT
LOC_Os06g44840
Os.13534.1.S1_at--1007--131Chr06:27091509..27091616 (25 bp)
ATTACTCCAGGGACGCAGGTAGATT
LOC_Os06g44840
Os.13534.1.S1_at--428--10431Chr06:27091510..27091617 (25 bp)
TTACTCCAGGGACGCAGGTAGATTG
LOC_Os06g44840
Os.13534.1.S1_at--302--9891Chr06:27091511..27091618 (25 bp)
TACTCCAGGGACGCAGGTAGATTGG
LOC_Os06g44840
Os.13534.1.S1_at--77--3811Chr06:27091600..27091620 (21 bp)
CTCCAGGGACGCAGGTAGATTGGAA
LOC_Os06g44840
Os.13534.1.S1_at--422--9211Chr06:27091600..27091621 (22 bp)
TCCAGGGACGCAGGTAGATTGGAAT
LOC_Os06g44840
Os.13534.1.S1_at--277--4351Chr06:27091600..27091622 (23 bp)
CCAGGGACGCAGGTAGATTGGAATT
LOC_Os06g44840
Os.13534.1.S1_at--525--3471Chr06:27091600..27091623 (24 bp)
CAGGGACGCAGGTAGATTGGAATTG
LOC_Os06g44840
Os.13534.1.S1_at--1069--7531Chr06:27091601..27091625 (25 bp)
GGGACGCAGGTAGATTGGAATTGGA
LOC_Os06g44840
Target Sequence 
GGCGATTACTCCAGGGACGCAGGTAGATTGGAATTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13534.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis