Browse Element(s) Details


Os.14208.1.S1_at

Description gb:AK104980.1
DB_XREF= gi:32990189
TID=Os.14208.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-125-D09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-125-D09, full insert sequence.
FL= gb:AK104980.1 gb:AK073288.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2800011/11Carboxyl-terminal proteinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27970OsAffx.27841.1.S1_s_at10/116+15862236..15871575Wilms' tumor 1-associating protein, putative, expressed
LOC_Os06g27980Os.54059.1.S1_at11/116+15876893..15878566expressed protein
LOC_Os06g27990Os.52447.1.S1_x_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g27990OsAffx.25367.1.S1_at1/116+15881630..15886247retrotransposon, putative, centromere-specific
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14208.1.S1_at--150--511Chr06:15890932..15890956 (25 bp)
ATCGTATCTGTTCACCCACCTGGCG
LOC_Os06g28000
Os.14208.1.S1_at--124--8651Chr06:15890760..15890784 (25 bp)
TGGGACAACAGCCTCATCCCGGCGG
LOC_Os06g28000
Os.14208.1.S1_at--178--3471Chr06:15890691..15890715 (25 bp)
CAGGGAGGCTCCAACTCCTACTGGG
LOC_Os06g28000
Os.14208.1.S1_at--948--8331Chr06:15890649..15890673 (25 bp)
GGCGGCCCCGGCAGGAATGTCAAAT
LOC_Os06g28000
Os.14208.1.S1_at--778--3011Chr06:15890627..15890651 (25 bp)
AATGCCCTTGAAAGGATCTCGCTCT
LOC_Os06g28000
Os.14208.1.S1_at--927--9571Chr06:15890595..15890619 (25 bp)
TCTTGTTGCTTGATGGCCGGTCACT
LOC_Os06g28000
Os.14208.1.S1_at--278--871Chr06:15890583..15890607 (25 bp)
ATGGCCGGTCACTCTTGTTTTTCTT
LOC_Os06g28000
Os.14208.1.S1_at--726--9571Chr06:15890529..15890553 (25 bp)
TCTTCTGTGTTCTTCTTTGTGATAG
LOC_Os06g28000
Os.14208.1.S1_at--638--10251Chr06:15890467..15890491 (25 bp)
TTTGTTAGGTCTTAGCTTGAGCTGC
LOC_Os06g28000
Os.14208.1.S1_at--458--3631Chr06:15890452..15890476 (25 bp)
CTTGAGCTGCTGAATGCATATGGGA
LOC_Os06g28000
Os.14208.1.S1_at--394--5391Chr06:15890395..15890419 (25 bp)
GAAGCACCTTGATTTTGGGATCAAT
LOC_Os06g28000
Target Sequence 
ATCGTATCTGTTCACCCACCTGGCGCACCACGNCAACNTGNTNCANTTTGGCGNCGAGNTGGTGAACACGCGNCCNTCGG
GGTCGCACACGGCGACNCAGATGGGGNANCGGTCACTTCCCCGGCGAGGGGTTCGACCGCGCCGCCTACTTCCGCAACCT
GCAGGTGGTGGACTGGGACAACAGCCTCATCCCGGCGGCCAACCTCAAGCTCCTCGCCGACCACCCTGCCTGCTACGACA
TCCAGGGAGGCTCCAACTCCTACTGGGGCAGCTACTTCTACTACGGCGGCCCCGGCAGGAATGTCAAATGCCCTTGAAAG
GATCTCGCTCTCTCCATCTCTTGTTGCTTGATGGCCGGTCACTCTTGTTTTTCTTTTTTTGTTCGTTTGTTTGTTTGTTT
TCTTTCTTCTGTGTTCTTCTTTGTGATAGAGATTGGTTAGTGCATTAATGCTAGGATATTACTCTATTTGTTAGGTCTTA
GCTTGAGCTGCTGAATGCATATGGGAGCAATTAAATTGAGANGGATTTGTAAATTTGAGAAGCACCTTGATTTTGGGATC
AAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis