Browse Element(s) Details


Os.15041.1.S1_a_at

Description gb:AK100148.1
DB_XREF= gi:32985357
TID=Os.15041.1
CNT=26
FEA=FLmRNA
TIER=FL+Stack
STK=12
UG=Os.15041 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023014E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014E12, full insert sequence.
FL= gb:AK100148.1 gb:AK099908.1 gb:AK066575.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3205011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32050Os.15041.1.S1_a_at11/114+19033410..19037973transposon protein, putative, unclassified, expressed
LOC_Os04g32060Os.55758.1.S1_at10/114+19040724..19044486transposon protein, putative, unclassified, expressed
LOC_Os04g32070Os.54991.1.S1_at11/114+19045745..19047749oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g32080Os.20001.1.S1_at6/114+19049260..19051632steroleosin, putative, expressed
LOC_Os04g32090OsAffx.14080.1.S1_at11/114+19053045..19058577expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15041.1.S1_a_at--888--3571Chr04:19037370..19037394 (25 bp)
CATATGCCGTCATCTACCGTGAGAT
LOC_Os04g32050
Os.15041.1.S1_a_at--613--8891Chr04:19037389..19037413 (25 bp)
TGAGATGTCAATCCTGGGTGTCGAA
LOC_Os04g32050
Os.15041.1.S1_a_at--166--7731Chr04:19037405..19037429 (25 bp)
GGTGTCGAAGGATTCTCAGCGCTGC
LOC_Os04g32050
Os.15041.1.S1_a_at--420--10211Chr04:19037473..19037497 (25 bp)
TATTTTGATCAACCTCCTGCGGGAC
LOC_Os04g32050
Os.15041.1.S1_a_at--613--8371Chr04:19037566..19037590 (25 bp)
GGCGTACTTTGCGATCGACATGTTC
LOC_Os04g32050
Os.15041.1.S1_a_at--1156--1911Chr04:19037597..19037621 (25 bp)
ACGGTTATCCTGTTTGTCTGGGAGA
LOC_Os04g32050
Os.15041.1.S1_a_at--350--5011Chr04:19037651..19037675 (25 bp)
GCAGGCGCGATTGCATCTGGTTTGA
LOC_Os04g32050
Os.15041.1.S1_a_at--984--6111Chr04:19037695..19037719 (25 bp)
GAGTGTTCCATCTGCGATATTGTCC
LOC_Os04g32050
Os.15041.1.S1_a_at--338--8891Chr04:19037724..19037748 (25 bp)
TGAGGATTGACCCACCAATGTGCAT
LOC_Os04g32050
Os.15041.1.S1_a_at--1094--771Chr04:19037741..19037765 (25 bp)
ATGTGCATGTACTTCAAGCCATCCC
LOC_Os04g32050
Os.15041.1.S1_a_at--1121--4411Chr04:19037758..19037782 (25 bp)
GCCATCCCTTACCAGCTGAAAATAG
LOC_Os04g32050
Target Sequence 
CATATGCCGTCATCTACCGTGAGATGTCAATCCTGGGTGTCGAAGGATTCTCAGCGCTGCCCCAACATTGCCTGGCGATC
TGCTNGGTCTTCTTTGTCGNAGCTATTTTGATCAACCTCCTGCGGGACGTCACTCCGAAGAGCGTCTCCAAGTTCATCCC
GCTCCCGATGGCTATGGCTGTCCCATTCTACATTGGGGCGTACTTTGCGATCGACATGTTCGTTGGGACGGTTATCCTGT
TTGTCTGGGAGAGGGTGAACCGCAAGGAATCTGAGGACTTTGCAGGCGCGATTGCATCTGGTTTGATCTGCGGTGATGGG
ATCTGGAGTGTTCCATCTGCGATATTGTCCATCATGAGGATTGACCCACCAATGTGCATGTACTTCAAGCCATCCCTTAC
CAGCTGAAAATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15041.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis