Browse Element(s) Details


Os.15112.1.S1_at

Description gb:AK070559.1
DB_XREF= gi:32980583
TID=Os.15112.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.15112 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative omega-6 fatty acid desaturase (OSJNBa0066B06.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023060M02, full insert sequence.
FL= gb:AK070559.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g234109/11Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23380OsAffx.22166.1.S1_at11/117+13175561..13176776acyl CoA reductase, putative
LOC_Os07g23390NANA7+13180189..13181185hypothetical protein
LOC_Os07g23400NANA7+13185512..13189103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g23410Os.15112.1.S1_at9/117+13199366..13200849Omega-6 fatty acid desaturase, endoplasmic reticulum isozyme 2, putative, expressed
LOC_Os07g23430Os.15139.1.S1_at9/117+13221598..13222864Omega-6 fatty acid desaturase, endoplasmic reticulum, putative, expressed
LOC_Os07g23440OsAffx.30725.2.S1_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440OsAffx.30725.2.S1_x_at10/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.47463.1.S1_x_at6/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.14491.2.S1_x_at5/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g23440Os.27037.1.A1_at1/117+13224111..13235492transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006633biological_processfatty acid biosynthesis
GO:0006636biological_processfatty acid desaturation
GO:0009266biological_processresponse to temperature stimulus
GO:0005783cellular_componentendoplasmic reticulum
GO:0009507cellular_componentchloroplast
GO:0016720molecular_functiondelta12-fatty acid dehydrogenase activity
GO:0042389molecular_functionomega-3 fatty acid desaturase activity
GO:0045485molecular_functionomega-6 fatty acid desaturase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15112.1.S1_at--556--4891Chr07:13199840..13199864 (25 bp)
GCTTCCTTAACCGAGTGTTTCACAA
LOC_Os07g23410
Os.15112.1.S1_at--595--1791Chr07:13199831..13199855 (25 bp)
ACCGAGTGTTTCACAACATCACGGA
LOC_Os07g23410
Os.15112.1.S1_at--319--551NONE
ATCCCGCACTACCACGCGGTGGAGG
NONE
Os.15112.1.S1_at--322--91NONE
GTTCGATCCCACACCCGTCGTTAAG
NONE
Os.15112.1.S1_at--901--6192Chr07:13199673..13199697 (25 bp)
GAGGCTAAGGAGTGCATCTACATCC
LOC_Os07g23410
Os.15112.1.S1_at--923--2912Chr07:13199667..13199691 (25 bp)
AAGGAGTGCATCTACATCCAGTCCG
LOC_Os07g23410
Os.15112.1.S1_at--944--7131Chr07:13199544..13199568 (25 bp)
GTCTTGCCTCATCGCTTCATCTAAA
LOC_Os07g23410
Os.15112.1.S1_at--530--9611Chr07:13199536..13199560 (25 bp)
TCATCGCTTCATCTAAACCCATAAT
LOC_Os07g23410
Os.15112.1.S1_at--1071--4891Chr07:13199531..13199555 (25 bp)
GCTTCATCTAAACCCATAATCTACT
LOC_Os07g23410
Os.15112.1.S1_at--86--10071Chr07:13199412..13199435 (24 bp)
TAGGGAGCGCCATAAATGCAGCTAA
LOC_Os07g23410
Os.15112.1.S1_at--1056--131Chr07:13199375..13199399 (25 bp)
ATTACTCTATTTATGCTTGGTTTCA
LOC_Os07g23410
Target Sequence 
GCTTCCTTAACCGAGTGTTTCACAACATCACGGACACGCACGTCCTGCACCACCTCTTCCCTGCCATCCCGCACTACCAC
GCGGTGGAGGCGACCAAGGCGATCCGCCCCGTCCTTGGCGAGTACTACCAGTTCGATCCCACACCCGTCGTTAAGGCGAT
ATGGCGCGAGGCTAAGGAGTGCATCTACATCCAGTCCGAGGACCACAAGGGCATCTTCTGGTACAGCNACAAGTTCTAGT
TCCTGCAGCAACGTCANGCGGGCGTATAGGAAGGGCTGACAGAATAAGCCGTGTCGGTCTTGCCTCATCGCTTCATCTAA
ACCCATAATCTACTTGAAGTCTTGAATTAATTGTAAACTCAAATGATATTCTCNANTAAAAAANAAAAATNCCTCTCTAN
ANANNNNNNAANNNCTTAACTGTCTGTAATAGGGAGCGCCATAAATGCAGCTAAAAATTACAAGAATTACTCTATTTATG
CTTGGTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15112.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis