Browse Element(s) Details


Os.15498.1.S1_at

Description gb:AK111827.1
DB_XREF= gi:37988490
TID=Os.15498.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.15498 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023059I04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023059I04, full insert sequence.
FL= gb:AK111827.1 gb:AK111562.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0797811/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g07966OsAffx.18918.1.S1_at1/1110+4009275..4011681hypothetical protein
LOC_Os10g07970Os.52713.1.S1_at11/1110+4017434..4019100Anthocyanidin 5,3-O-glucosyltransferase, putative, expressed
LOC_Os10g07974NANA10+4025454..4026478hypothetical protein
LOC_Os10g07978Os.15498.1.S1_at11/1110+4028589..4032507NB-ARC domain containing protein, expressed
LOC_Os10g07982NANA10+4038971..4039291hypothetical protein
LOC_Os10g07986NANA10+4041940..4042533hypothetical protein
LOC_Os10g07990NANA10+4045033..4045634hypothetical protein
LOC_Os10g07994Os.54673.1.S1_at10/1110+4047105..4052635Autophagy protein Apg9 containing protein, expressed
LOC_Os10g07998Os.55015.1.S1_at11/1110+4056846..4060979Integral membrane protein DUF6 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15498.1.S1_at--437--3411Chr10:4031921..4031945 (25 bp)
CAGCAGCTAGTGAAGCTTCAGCTTT
LOC_Os10g07978
Os.15498.1.S1_at--290--2791Chr10:4031963..4031987 (25 bp)
AAGAGGCTGTCTTTCCAGGCAACAT
LOC_Os10g07978
Os.15498.1.S1_at--969--9251Chr10:4032025..4032049 (25 bp)
TCCTCACCTCAGTCTGATCAAGATA
LOC_Os10g07978
Os.15498.1.S1_at--402--831Chr10:4032071..4032095 (25 bp)
ATGGTTGATCTTAAGCTCCTGCTCT
LOC_Os10g07978
Os.15498.1.S1_at--688--3831Chr10:4032089..4032113 (25 bp)
CTGCTCTGCCCTGAATTGAAGTTGT
LOC_Os10g07978
Os.15498.1.S1_at--1084--5191Chr10:4032101..4032125 (25 bp)
GAATTGAAGTTGTTGCCTCGCGGCA
LOC_Os10g07978
Os.15498.1.S1_at--1143--10691Chr10:4032113..4032137 (25 bp)
TTGCCTCGCGGCATTGAGCATGTGA
LOC_Os10g07978
Os.15498.1.S1_at--813--5931Chr10:4032128..4032152 (25 bp)
GAGCATGTGACCACTCTCGAAGAGA
LOC_Os10g07978
Os.15498.1.S1_at--98--6311Chr10:4032151..4032175 (25 bp)
GATGACTTTGGATTCTACAGCAGAG
LOC_Os10g07978
Os.15498.1.S1_at--1136--6211Chr10:4032206..4032230 (25 bp)
GAGGCCAGGATTTCTCATGTCAAGA
LOC_Os10g07978
Os.15498.1.S1_at--718--4351Chr10:4032380..4032404 (25 bp)
CCAGACAATGCCATTTTCCTTTTCA
LOC_Os10g07978
Target Sequence 
CAGCAGCTAGTGAAGCTTCAGCTTTATGATGCATATAATGGCAAGAGGCTGTCTTTCCAGGCAACATCATTTCCAAAGCT
CAGGATACTGAAGATCTGGGGAGCTCCTCACCTCAGTCTGATCAAGATAGAAAGAGGGGCCATGTCAAGCATGGTTGATC
TTAAGCTCCTGCTCTGCCCTGAATTGAAGTTGTTGCCTCGCGGCATTGAGCATGTGACCACTCTCGAAGAGATGACTTTG
GATTCTACAGCAGAGGAGCTTGTGGGCAGGGTTAGGAAGAAGAATGAGGCCAGGATTTCTCATGTCAAGAGAGTTTATGT
TGGGTTCATCAGAAATGGTGAGCTGGCTGCAGAAAGGATACAATAAATCGATGTCTATCTAGACAATGTCATGTATCNTT
TCAACTATGATTTTCCTATTTTGTACATTTATAATTTTGTATTGGTCTTATGATGTAATCCAGACAATGCCATTTTCCTT
TTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15498.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis