Browse Element(s) Details


Os.15537.1.S1_at

Description gb:AF488521.1
DB_XREF= gi:19849278
GEN=PM-I
TID=Os.15537.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.15537 (NCBI UniGene Cluster)
DEF=Oryza sativa Cyt-P450 monooxygenase (PM-I) mRNA, complete cds.
PROD=Cyt-P450 monooxygenase
FL= gb:AF488521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3966011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g39630Os.5311.1.S1_at10/118+24956680..24959677Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os08g39640NANA8+24969322..24972773Cytochrome P450 family protein
LOC_Os08g39650NANA8+24974284..24976560retrotransposon protein, putative, unclassified
LOC_Os08g39660Os.15537.1.S1_at11/118+24976813..24978479Cytochrome P450 family protein, expressed
LOC_Os08g39670NANA8+24979909..24981853retrotransposon protein, putative, LINE subclass
LOC_Os08g39680OsAffx.17424.1.S1_at8/118+24983300..24988153expressed protein
LOC_Os08g39680OsAffx.23176.3.S1_x_at1/118+24983300..24988153expressed protein
LOC_Os08g39694Os.5661.1.S1_s_at11/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.51910.1.S1_x_at10/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.54695.1.S1_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.52051.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694Os.38269.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed
LOC_Os08g39694OsAffx.855.1.S1_x_at1/118+24988448..25001522Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15537.1.S1_at--252--9171Chr08:24977263..24977287 (25 bp)
TGCCGAAGGGCTCGACTGTGATATT
LOC_Os08g39660
Os.15537.1.S1_at--624--2871Chr08:24977258..24977282 (25 bp)
AAGGGCTCGACTGTGATATTCAATG
LOC_Os08g39660
Os.15537.1.S1_at--458--3891Chr08:24977248..24977272 (25 bp)
CTGTGATATTCAATGTGTGGACTAT
LOC_Os08g39660
Os.15537.1.S1_at--1088--8651Chr08:24977233..24977257 (25 bp)
TGTGGACTATCATGCGAGACCCTGC
LOC_Os08g39660
Os.15537.1.S1_at--506--10171Chr08:24977226..24977250 (25 bp)
TATCATGCGAGACCCTGCAGCGTGG
LOC_Os08g39660
Os.15537.1.S1_at--10--4471Chr08:24976925..24976949 (25 bp)
GCCTCTCATCAAATTTAAGTGTAGT
LOC_Os08g39660
Os.15537.1.S1_at--519--11Chr08:24976903..24976927 (25 bp)
AGTAGTGGTACGTACTAGGATACTA
LOC_Os08g39660
Os.15537.1.S1_at--953--10071Chr08:24976888..24976912 (25 bp)
TAGGATACTAGCATACTGTCTGCAT
LOC_Os08g39660
Os.15537.1.S1_at--145--4971Chr08:24976878..24976902 (25 bp)
GCATACTGTCTGCATGTTCACGAGA
LOC_Os08g39660
Os.15537.1.S1_at--370--4991Chr08:24976867..24976891 (25 bp)
GCATGTTCACGAGAATAGGTTTACT
LOC_Os08g39660
Os.15537.1.S1_at--849--7851Chr08:24976850..24976874 (25 bp)
GGTTTACTTCACAGTTTAAATGTCA
LOC_Os08g39660
Target Sequence 
TGCCGAAGGGCTCGACTGTGATATTCAATGTGTGGACTATCATGCGAGACCCTGCAGCGTGGGAGAGGCCGGAGGAGTTC
ATGCCGGAGAGGTTCCTGCAAAGAGCAGAGGTGGATTTCCGAGGTAAAGACTTCGAGTTCATCCCGTTCGGGGCCGGAAG
GAGGCTGTGCCCGGGGTTGCCGATGACAGAGCGCGTCGTGCCATTCATTTTGGCGTCGCTGCTTCATGCGTTCGAGTGGA
GGCTCCCTGTCGGTGTGGCAGCGGAGACTTTGGATCTTAGTGAGAAGTTTACTACTGTCAATGTTCTTGTTACTCCACTC
AAGGCCATCCCCATACTTGCCTCTCATCAAATTTAAGTGTAGTAGTGGTACGTACTAGGATACTAGCATACTGTCTGCAT
GTTCACGAGAATAGGTTTACTTCACAGTTTAAATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15537.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis