Browse Element(s) Details


Os.15704.1.S1_at

Description gb:AK100523.1
DB_XREF= gi:32985732
TID=Os.15704.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15704 (NCBI UniGene Cluster)
UG_TITLE=CSLF2 mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023100P04, full insert sequence.
FL= gb:AK100523.1 gb:AK066835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3669010/11Cellulose synthase family protein, expressed
LOC_Os07g367002/11Cellulose synthase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g36670NANA7+21941964..21947588retrotransposon protein, putative, unclassified
LOC_Os07g36680OsAffx.28783.1.S1_at10/117+21951147..21954784hypothetical protein
LOC_Os07g36690Os.15704.1.S1_at10/117+21968671..21971686Cellulose synthase family protein, expressed
LOC_Os07g36700Os.15704.1.S1_at2/117+21987389..21990062Cellulose synthase family protein
LOC_Os07g36700OsAffx.16586.1.S1_x_at1/117+21987389..21990062Cellulose synthase family protein
LOC_Os07g36710NANA7+21991717..21994128retrotransposon protein, putative, unclassified
LOC_Os07g36720NANA7+21995956..22000572retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000271biological_processpolysaccharide biosynthesis
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0005783cellular_componentendoplasmic reticulum
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016759molecular_functioncellulose synthase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15704.1.S1_at--891--8831Chr07:21971150..21971174 (25 bp)
TGATACCGACCATCGTCATCATTGT
LOC_Os07g36690
Os.15704.1.S1_at--29--7131Chr07:21971164..21971188 (25 bp)
GTCATCATTGTCGTGAACGTCGCCG
LOC_Os07g36690
Os.15704.1.S1_at--286--4172Chr07:21989822..21989846 (25 bp)
CGCCGTGCTCGGGATGGTGTTCAAC
LOC_Os07g36700
Os.15704.1.S1_at--697--7332Chr07:21989977..21990001 (25 bp)
GTGCACCGTACCAAGCTGAGTTGTC
LOC_Os07g36700
Os.15704.1.S1_at--31--9651Chr07:21971428..21971452 (25 bp)
TCAGGTGGTGCTGCTTCTCTCGGAA
LOC_Os07g36690
Os.15704.1.S1_at--31--1071Chr07:21971486..21971510 (25 bp)
AGGGACAGTTCGATCGCGTTTGATT
LOC_Os07g36690
Os.15704.1.S1_at--771--7911Chr07:21971549..21971573 (25 bp)
GGTTGTTACTTCTGTTATGTCGTTA
LOC_Os07g36690
Os.15704.1.S1_at--952--751Chr07:21971565..21971589 (25 bp)
ATGTCGTTACGTCATAGGAGCGGCT
LOC_Os07g36690
Os.15704.1.S1_at--905--951Chr07:21971580..21971604 (25 bp)
AGGAGCGGCTGACTATATTGCTAGT
LOC_Os07g36690
Os.15704.1.S1_at--194--10231Chr07:21971595..21971619 (25 bp)
TATTGCTAGTCTGCTCTATACGAGT
LOC_Os07g36690
Os.15704.1.S1_at--153--3131NONE
AATTTCTCCAGCGTGATTCTGTCGA
NONE
Target Sequence 
TGATACCGACCATCGTCATCATTGTCGTGAACGTCGCCGCCGTCGGGGTGGCGGTCGGCAAGGCGGCGGCGTGGGGGCCG
CTCACCGAGCCGGGGTNGCTCGCCGTGCTCGGGATGGTGTTCAACGTGTGGATCCTGGTGCTCCTCTACCCGTTCGCGCT
CGGGGTCATGGGTCAATGGGGGAAGCGGCCGGCCGTGCTGTTCGTGGCGATGGCGATGGCCGTCGCCGCCGTGGCGGCCA
TGTACGTCGCCTTCGGTGCACCGTACCAAGCTGAGTTGTCAGGTGGTGCTGCTTCTCTCGGAAAAGCGGCGGCGTCGCTG
ACCGGGCCATCCGGGTAGGGACAGTTCGATCGCGTTTGATTTGATTTGAATATTTGATTATTTTCTTGGTGCAATAATTG
GTTGTTACTTCTGTTATGTCGTTACGTCATAGGAGCGGCTGACTATATTGCTAGTCTGCTCTATACGAGTGAGACTTGGA
TTGTTCTTCTTTAAAAATGACAAGATTTGAATTTCTCCAGCGTGATTCTGTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15704.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis