Browse Element(s) Details


Os.15845.1.S1_at

Description gb:AK107179.1
DB_XREF= gi:32992388
TID=Os.15845.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H01, full insert sequence.
FL= gb:AK107179.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2806010/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060Os.15845.2.S1_at11/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_x_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28070NANA6+15937011..15941287hypothetical protein
LOC_Os06g28080NANA6+15944716..15947917Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28090Os.31312.2.S1_x_at4/116+15952731..15955990retrotransposon protein, putative, unclassified
LOC_Os06g28090Os.31312.5.S1_x_at4/116+15952731..15955990retrotransposon protein, putative, unclassified
LOC_Os06g28100NANA6+15956624..15962781retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15845.1.S1_at--957--7111Chr06:15928575..15928599 (25 bp)
GTCATAGTGGCATCAGTAAAAGCTT
LOC_Os06g28060
Os.15845.1.S1_at--565--8271Chr06:15928567..15928591 (25 bp)
GGCATCAGTAAAAGCTTTGCACTTT
LOC_Os06g28060
Os.15845.1.S1_at--373--2433Chr12:553306..553659 (25 bp)
AAAAGCTTTGCACTTTTCTTTTGCT
NONE
Os.15845.1.S1_at--882--10271NONE
TTTGCTTTTGTATATGTGCTCTTAA
NONE
Os.15845.1.S1_at--304--6891Chr06:15928530..15928554 (25 bp)
GTATATGTGCTCTTAACTATTCAGA
LOC_Os06g28060
Os.15845.1.S1_at--823--7311Chr06:15928524..15928548 (25 bp)
GTGCTCTTAACTATTCAGACATGTA
LOC_Os06g28060
Os.15845.1.S1_at--713--2511Chr06:15928516..15928540 (25 bp)
AACTATTCAGACATGTACTCAAGGG
LOC_Os06g28060
Os.15845.1.S1_at--395--10531Chr06:15928511..15928535 (25 bp)
TTCAGACATGTACTCAAGGGTGATT
LOC_Os06g28060
Os.15845.1.S1_at--113--5671Chr06:15928507..15928531 (25 bp)
GACATGTACTCAAGGGTGATTTATT
LOC_Os06g28060
Os.15845.1.S1_at--456--6551Chr06:15928482..15928506 (25 bp)
GATTAAATTTTGTTTCTACAGCTAT
LOC_Os06g28060
Os.15845.1.S1_at--1068--8771Chr06:15928472..15928496 (25 bp)
TGTTTCTACAGCTATTGCAGAACTT
LOC_Os06g28060
Target Sequence 
GTCATAGTGGCATCAGTAAAAGCTTTGCACTTTTCTTTTGCTTTTGTATATGTGCTCTTAACTATTCAGACATGTACTCA
AGGGTGATTTATTGATTAAATTTTGTTTCTACAGCTATTGCAGAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15845.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis