Browse Element(s) Details

Os.15845.1.S1_x_at

Description

gb:AK107179.1
DB_XREF= gi:32992388
TID=Os.15845.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-H01, full insert sequence.
FL= gb:AK107179.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g28060	10/11	ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g28010	NA	NA	6	+	15900365..15901077	retrotransposon, putative, centromere-specific
LOC_Os06g28020	NA	NA	6	+	15902547..15904690	retrotransposon, putative, centromere-specific
LOC_Os06g28030	OsAffx.27843.1.S1_at	11/11	6	+	15905024..15906173	hypothetical protein
LOC_Os06g28040	OsAffx.27844.1.S1_at	10/11	6	+	15909858..15911273	hypothetical protein
LOC_Os06g28050	Os.19061.2.S1_at	11/11	6	+	15914521..15917811	DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050	Os.19061.1.S1_s_at	11/11	6	+	15914521..15917811	DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050	Os.19061.1.S1_at	10/11	6	+	15914521..15917811	DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060	Os.15845.2.S1_at	11/11	6	+	15922001..15932071	ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060	Os.15845.1.S1_x_at	10/11	6	+	15922001..15932071	ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060	Os.15845.1.S1_at	10/11	6	+	15922001..15932071	ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28070	NA	NA	6	+	15937011..15941287	hypothetical protein
LOC_Os06g28080	NA	NA	6	+	15944716..15947917	Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28090	Os.31312.2.S1_x_at	4/11	6	+	15952731..15955990	retrotransposon protein, putative, unclassified
LOC_Os06g28090	Os.31312.5.S1_x_at	4/11	6	+	15952731..15955990	retrotransposon protein, putative, unclassified
LOC_Os06g28100	NA	NA	6	+	15956624..15962781	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005524	molecular_function	ATP binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.15845.1.S1_x_at--237--559	1	Chr06:15929978..15930002 (25 bp)	GAAATGCTGGTCAAGCTTCCACATG	LOC_Os06g28060
Os.15845.1.S1_x_at--163--621	1	Chr06:15929859..15929883 (25 bp)	GAGGCAGCTGCTTTTCTATGTTCAC	LOC_Os06g28060
Os.15845.1.S1_x_at--861--723	1	Chr06:15929834..15929858 (25 bp)	GTCCCATGTCTATTGCATTGCCATT	LOC_Os06g28060
Os.15845.1.S1_x_at--1000--523	1	Chr06:15929784..15929808 (25 bp)	GAATACAGTGTTGCTGCTCAACCCA	LOC_Os06g28060
Os.15845.1.S1_x_at--5--291	1	Chr06:15928638..15928662 (25 bp)	AAGGATTCACCCCAAGTTTCTTCAT	LOC_Os06g28060
Os.15845.1.S1_x_at--374--243	3	Chr12:553306..553659 (25 bp)	AAAAGCTTTGCACTTTTCTTTTGCT	NONE
Os.15845.1.S1_x_at--883--1027	1	NONE	TTTGCTTTTGTATATGTGCTCTTAA	NONE
Os.15845.1.S1_x_at--656--869	1	Chr06:15928525..15928549 (25 bp)	TGTGCTCTTAACTATTCAGACATGT	LOC_Os06g28060
Os.15845.1.S1_x_at--303--965	1	Chr06:15928510..15928534 (25 bp)	TCAGACATGTACTCAAGGGTGATTT	LOC_Os06g28060
Os.15845.1.S1_x_at--561--1079	1	Chr06:15928473..15928497 (25 bp)	TTGTTTCTACAGCTATTGCAGAACT	LOC_Os06g28060
Os.15845.1.S1_x_at--511--505	1	Chr06:15928456..15928480 (25 bp)	GCAGAACTTCTCGACAATGCTGTTG	LOC_Os06g28060

Target Sequence

GAAATGCTGGTCAAGCTTCCACATGCTCATCAATGTCAGAGCAAGGTGCTATCACATACTCATCAATGACAGAACAAATT
GCTACTGCATCCTCATNNATGACTGGGCAATGGAGTAGGGAGGCAGCTGCTTTTCTATGTTCACGTCCCATGTCTATTGC
ATTGCCATTCCCCCGGCAGTTCTGGAAAGCTGGGGAATACAGTGTTGCTGCTCAACCCACCATCAACAGTGATCAGAACC
ACTTAAGGATTCACCCCAAGTTTCTTCATTCGAATGCTACTTCACACAAGTGGGCATTTGGTGGTGCGTCATAGTGGCAT
CAGTAAAAGCTTTGCACTTTTCTTTTGCTTTTGTATATGTGCTCTTAACTATTCAGACATGTACTCAAGGGTGATTTATT
GATTAAATTTTGTTTCTACAGCTATTGCAGAACTTCTCGACAATGCTGTTG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis