Browse Element(s) Details


Os.15845.2.S1_at

Description gb:AK120053.1
DB_XREF= gi:37989676
TID=Os.15845.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.15845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-124-H01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K15, full insert sequence.
FL= gb:AK120053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2806011/11ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060Os.15845.2.S1_at11/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_x_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28070NANA6+15937011..15941287hypothetical protein
LOC_Os06g28080NANA6+15944716..15947917Transposable element protein, putative, Retrotrans_gag
LOC_Os06g28090Os.31312.2.S1_x_at4/116+15952731..15955990retrotransposon protein, putative, unclassified
LOC_Os06g28090Os.31312.5.S1_x_at4/116+15952731..15955990retrotransposon protein, putative, unclassified
LOC_Os06g28100NANA6+15956624..15962781retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005524molecular_functionATP binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.15845.2.S1_at--1031--4891Chr06:15922301..15922325 (25 bp)
GCTTCCCACGGTATCAAGGTTCTGA
LOC_Os06g28060
Os.15845.2.S1_at--825--2891Chr06:15922286..15922310 (25 bp)
AAGGTTCTGACGCTGGATGTCTTAC
LOC_Os06g28060
Os.15845.2.S1_at--718--7971Chr06:15922272..15922296 (25 bp)
GGATGTCTTACAAGACCTTAGCCCC
LOC_Os06g28060
Os.15845.2.S1_at--673--4311Chr06:15922248..15922272 (25 bp)
CCTTCTGCTGTAGCCAACACAGATT
LOC_Os06g28060
Os.15845.2.S1_at--573--1771Chr06:15922220..15922244 (25 bp)
ACCTGTGTATATATCACCGTGCCAG
LOC_Os06g28060
Os.15845.2.S1_at--945--9671Chr06:15922207..15922231 (25 bp)
TCACCGTGCCAGACGCAGAAGGTAT
LOC_Os06g28060
Os.15845.2.S1_at--453--7391Chr06:15922178..15922202 (25 bp)
GGTGCATGGTAAAACCCCAAAGTAT
LOC_Os06g28060
Os.15845.2.S1_at--907--711Chr06:15922153..15922177 (25 bp)
ATGATCTCGTTACTTTTTTAGTGGG
LOC_Os06g28060
Os.15845.2.S1_at--1056--7672Chr06:17476680..17477006 (25 bp)
GGGTTCAGCTGAGTGAGCTCCGCAA
NONE
Os.15845.2.S1_at--931--4791Chr06:15922115..15922139 (25 bp)
GCTCCGCAAGACCTTAATTTCTGTT
LOC_Os06g28060
Os.15845.2.S1_at--512--2411Chr06:15922062..15922086 (25 bp)
AAACAAGACCTCCTAACTGAAGAAG
LOC_Os06g28060
Target Sequence
GCTTCCCACGGTATCAAGGTTCTGACGCTGGATGTCTTACAAGACCTTAGCCCCCTTCTGCTGTAGCCAACACAGATTTT
TACCTGTGTATATATCACCGTGCCAGACGCAGAAGGTATTTGGGGTGCATGGTAAAACCCCAAAGTATATGATCTCGTTA
CTTTTTTAGTGGGTTCAGCTGAGTGAGCTCCGCAAGACCTTAATTTCTGTTAGCACAGAAGATAGAGGAAAGAAAACCTA
AACAAGACCTCCTAACTGAAGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15845.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis