Browse Element(s) Details


Os.16044.1.S1_at

Description gb:AK103266.1
DB_XREF= gi:32988475
TID=Os.16044.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.16044 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033124G19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033124G19, full insert sequence.
FL= gb:AK103266.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3091011/11nodulin MtN3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30880NANA2+18421042..18426637retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os02g30890NANA2+18429233..18429433hypothetical protein
LOC_Os02g30900Os.49382.1.S1_at10/112+18440134..18444624Serine/threonine-protein kinase RLCKVII, putative, expressed
LOC_Os02g30910Os.16044.1.S1_at11/112+18448539..18451267nodulin MtN3 family protein, putative, expressed
LOC_Os02g30920NANA2+18463256..18464808hypothetical protein
LOC_Os02g30930OsAffx.12300.1.S1_at11/112+18468625..18470220hypothetical protein
LOC_Os02g30940OsAffx.2815.1.S1_at10/112+18473317..18475479hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16044.1.S1_at--419--1031Chr02:18449083..18449107 (25 bp)
AGGTGCACCCCATCGACGACGTGAT
LOC_Os02g30910
Os.16044.1.S1_at--477--9711Chr02:18448954..18448978 (25 bp)
TCAAGCCTGACATGGCCATTGTTGT
LOC_Os02g30910
Os.16044.1.S1_at--60--3771Chr02:18448888..18448912 (25 bp)
CTCTCATGTGAGGTATAGCCAGCTA
LOC_Os02g30910
Os.16044.1.S1_at--751--4411Chr02:18448871..18448895 (25 bp)
GCCAGCTAGCTGGTGGTACACAAAC
LOC_Os02g30910
Os.16044.1.S1_at--1089--5491Chr02:18448838..18448862 (25 bp)
GAACACATGTTCATCGCGTACGTAC
LOC_Os02g30910
Os.16044.1.S1_at--1020--511Chr02:18448826..18448850 (25 bp)
ATCGCGTACGTACTAGCTACTAGGT
LOC_Os02g30910
Os.16044.1.S1_at--798--9271Chr02:18448767..18448791 (25 bp)
TCCGGCCAGATCTAGTAGGGACTGT
LOC_Os02g30910
Os.16044.1.S1_at--807--10071Chr02:18448752..18448776 (25 bp)
TAGGGACTGTATTGGCGCGTGACTC
LOC_Os02g30910
Os.16044.1.S1_at--990--5991Chr02:18448702..18448726 (25 bp)
GAGACCGACCGAGCAAGCAAGCTAA
LOC_Os02g30910
Os.16044.1.S1_at--15--6351Chr02:18448576..18448600 (25 bp)
GATGCTCTTGCTTAGCTTCATTCGA
LOC_Os02g30910
Os.16044.1.S1_at--273--4911Chr02:18448562..18448586 (25 bp)
GCTTCATTCGATTCATGCAGTTCAA
LOC_Os02g30910
Target Sequence 
AGGTGCACCCCATCGACGACGTGATGCCCTCGGAGGTGGTGGAGGTGAAGGTGGATGACGAGGAGACGAACCGTACGGAC
GAGATGGCCGGTGACGGCGATCACGCNATGGTCAGAACGGAGCAGATCATCAAGCCTGACATGGCCATTGTTGTGGAAGT
GTAGTCTGATTAAGCTTAGAGAACTAGTAGTAATTCTCTCATGTGAGGTATAGCCAGCTAGCTGGTGGTACACAAACATA
AACACGAACACATGTTCATCGCGTACGTACTAGCTACTAGGTGAGACACCTCTTGGCNTAGTACGTACAGTNGTACTCCG
GCCAGATCTAGTAGGGACTGTATTGGCGCGTGACTCGCCTGGTTCGTCCNGCTTGNATGCAGAGACCGACCGAGCAAGCA
AGCTAATTAAGCTGGNCCGANCGACCGAGTGCATGCGTGTNTTGTGAANCTAGCTACTGAGGGGGGAGTGANNGGTGTGG
GTGTGCAANNGANCGGCCTGTCGCGTCGATGCTCTTGCTTAGCTTCATTCGATTCATGCAGTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16044.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis