Browse Element(s) Details


Os.16324.1.S1_at

Description gb:AK068994.1
DB_XREF= gi:32979018
TID=Os.16324.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-011-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023002B13, full insert sequence.
FL= gb:AK068994.1 gb:AK105024.2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3887011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g38850Os.52191.1.A1_at11/1112+23846311..23851430expressed protein
LOC_Os12g38860OsAffx.32087.1.S1_at11/1112+23851864..23855278Protein kinase domain containing protein, expressed
LOC_Os12g38870Os.16324.1.S1_at11/1112+23859127..23864684expressed protein
LOC_Os12g38880Os.11612.1.S1_at10/1112+23878675..23881227pentatricopeptide, putative, expressed
LOC_Os12g38890NANA12+23881418..23883176transposon protein, putative, unclassified
LOC_Os12g38900Os.23421.1.S1_at11/1112+23885360..23889818Chorismate mutase, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16324.1.S1_at--832--5331Chr12:23859654..23859678 (25 bp)
GAAGTTGAGGTAAGCCCACCTCCAG
LOC_Os12g38870
Os.16324.1.S1_at--32--1611Chr12:23859604..23859628 (25 bp)
AGCTGACTTGGACGCTAATGCTCTC
LOC_Os12g38870
Os.16324.1.S1_at--135--9771Chr12:23859589..23859613 (25 bp)
TAATGCTCTCGGCATAACTGGGTGG
LOC_Os12g38870
Os.16324.1.S1_at--654--5371Chr12:23859563..23859587 (25 bp)
GAAGAACAACCAGGCGCTGCCGTCG
LOC_Os12g38870
Os.16324.1.S1_at--1063--8371Chr12:23859523..23859547 (25 bp)
GGCGAACAATGCGTCATTGCGTCTA
LOC_Os12g38870
Os.16324.1.S1_at--1085--10311Chr12:23859484..23859508 (25 bp)
TTTAGGTGCCTTAGCTGACGGGAAA
LOC_Os12g38870
Os.16324.1.S1_at--384--7731Chr12:23859320..23859344 (25 bp)
GGTGTACATCTCTTTGTTTCGGTAT
LOC_Os12g38870
Os.16324.1.S1_at--1146--9991Chr12:23859220..23859244 (25 bp)
TAGCTCCTTGAATATCAGTCTGTGA
LOC_Os12g38870
Os.16324.1.S1_at--151--7191Chr12:23859203..23859227 (25 bp)
GTCTGTGATGTCATGTTCTGAGTTC
LOC_Os12g38870
Os.16324.1.S1_at--156--3171Chr12:23859162..23859186 (25 bp)
AATTGCTGGAACTGGGTGACCTGCA
LOC_Os12g38870
Os.16324.1.S1_at--691--6532Chr12:23859137..23859161 (25 bp)
GATTTACTAATGCTCACTGATGATG
LOC_Os12g38870
Target Sequence 
GAAGTTGAGGTAAGCCCACCTCCAGCTCCAGCGCCGCCACCTCCTCCCCCAGCTGACTTGGACGCTAATGCTCTCGGCAT
AACTGGGTGGGGAAGAACAACCAGGCGCTGCCGTCGACCGAGATGCCCTCCGGCGAACAATGCGTCATTGCGTCTAGCTT
GAGAGAGAATTTTAGGTGCCTTAGCTGACGGGAAATGATCTTGAAACTGTATTTTTGGGTGGAGTTGCAGAGAAATTTGT
GNCCTTGGTAGCTTGACAGTAATCAATCAACATTGTACATGCTGCTCAGCCCCTAATTTGGGGCTCCAGAAACCTGCATT
GGATAAAAAAACATGGTGTACATCTCTTTGTTTCGGTATAAACTCTGATTCTAGATAGCAATGCACCTGAAGAACAGGCC
TTGTGAAACCTGGAATATCAGTTGTAATTAGATTTAGCTCCTTGAATATCAGTCTGTGATGTCATGTTCTGAGTTCAGAA
TATAANNNAAANAATTGCTGGAACTGGGTGACCTGCAGATTTACTAATGCTCACTGATGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis