Browse Element(s) Details


Os.16630.1.S1_at

Description gb:AK108101.1
DB_XREF= gi:32993310
TID=Os.16630.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by FGENESH etc. (P0617C02.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-B01, full insert sequence.
FL= gb:AK108101.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0162011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01570NANA7+356762..357220hypothetical protein
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein
LOC_Os07g01600Os.14539.1.S1_at11/117+372110..373981Dirigent-like protein, expressed
LOC_Os07g01610NANA7+374522..376615retrotransposon protein, putative, unclassified
LOC_Os07g01620Os.16630.1.S1_at11/117+381818..382537Dirigent-like protein, expressed
LOC_Os07g01630Os.27990.1.S1_at10/117+382650..383470Dirigent-like protein, expressed
LOC_Os07g01640NANA7+386259..389308retrotransposon protein, putative, unclassified
LOC_Os07g01650NANA7+389938..395275transposon protein, putative, unclassified
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16630.1.S1_at--760--7431Chr07:382122..382146 (25 bp)
GTGTTTGTGGTCTCCATCACCCTCG
LOC_Os07g01620
Os.16630.1.S1_at--874--6191Chr07:382289..382313 (25 bp)
GAGGCGGGAGTCTCCGGTGCACATG
LOC_Os07g01620
Os.16630.1.S1_at--633--8751Chr07:382330..382354 (25 bp)
TGTACGCGTGGGTGCCCGCGTCATC
LOC_Os07g01620
Os.16630.1.S1_at--776--8311Chr07:382361..382385 (25 bp)
GGCTCGCCGTTGGTCGTCACTGCTG
LOC_Os07g01620
Os.16630.1.S1_at--237--7811Chr07:382372..382396 (25 bp)
GGTCGTCACTGCTGCGTGGCACAAA
LOC_Os07g01620
Os.16630.1.S1_at--222--9151Chr07:382384..382408 (25 bp)
TGCGTGGCACAAACGTCGTCACGGC
LOC_Os07g01620
Os.16630.1.S1_at--727--8811Chr07:382412..382436 (25 bp)
TGTTGACGACGCTGATTCTTATTTC
LOC_Os07g01620
Os.16630.1.S1_at--1138--5771Chr07:382416..382440 (25 bp)
GACGACGCTGATTCTTATTTCTAAT
LOC_Os07g01620
Os.16630.1.S1_at--370--10131Chr07:382444..382468 (25 bp)
TATACTTTACTACTCGAGTTGGTTG
LOC_Os07g01620
Os.16630.1.S1_at--731--4951Chr07:382470..382494 (25 bp)
GCATTTGTCGCAACCGCAACAAACA
LOC_Os07g01620
Os.16630.1.S1_at--730--3251Chr07:382480..382504 (25 bp)
CAACCGCAACAAACATTTTCCTTCA
LOC_Os07g01620
Target Sequence 
GTGTTTGTGGTCTCCATCACCCTCGTCCTCACCGACGGGCCCTACAAGGGGAGCACCATCCTCATCGCCGGCCGCGACGA
CATCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTGGGCGGGACGGNCAAGCTCCGGCGAGCCACCGGGCACGTGCTGTGGA
CGACGGCGAGGCGGGAGTCTCCGGTGCACATGGTGCTGGAGCTCGACGTGTACGCGTGGGTGCCCGCGTCATCTTCTCCG
GCTCGCCGTTGGTCGTCACTGCTGCGTGGCACAAACGTCGTCACGGCTGATGTTGACGACGCTGATTCTTATTTCTAATT
ANTATACTTTACTACTCGAGTTGGTTGNGCATTTGTCGCAACCGCAACAAACATTTTCCTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis