Browse Element(s) Details


Os.17325.1.S1_at

Description gb:AK069496.1
DB_XREF= gi:32979520
TID=Os.17325.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17325 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023025C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025C19, full insert sequence.
FL= gb:AK061176.1 gb:AK069496.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0320011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g03150Os.6063.1.S1_at11/113+1305742..1309535Fizzy-related protein homolog, putative, expressed
LOC_Os03g03164Os.4164.2.S1_a_at11/113+1318397..1323586Homeobox protein HD1, putative, expressed
LOC_Os03g03180Os.7349.1.S1_at11/113+1324348..1327861Protein of unknown function, DUF614 containing protein, expressed
LOC_Os03g03190OsAffx.3121.1.S1_at11/113+1328923..1329342hypothetical protein
LOC_Os03g03200Os.17325.1.S1_at11/113+1333861..1336527expressed protein
LOC_Os03g03210NANA3+1342173..1346917retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03220Os.46995.1.S1_x_at1/113+1347247..1350160retrotransposon protein, putative, unclassified
LOC_Os03g03230NANA3+1350524..1352245retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g03240NANA3+1360916..1363841retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17325.1.S1_at--598--5391Chr03:1336137..1336161 (25 bp)
GAAGCAGCAGTTCGCCGTATGACAC
LOC_Os03g03200
Os.17325.1.S1_at--290--8451Chr03:1336170..1336194 (25 bp)
TGGCCGTTGCAGTCGGACACAAACT
LOC_Os03g03200
Os.17325.1.S1_at--1085--8131Chr03:1336184..1336208 (25 bp)
GGACACAAACTGAATGCCACGGCAT
LOC_Os03g03200
Os.17325.1.S1_at--556--9251Chr03:1336231..1336255 (25 bp)
TCCTCCGGTCTCAATTTTTGGTTCA
LOC_Os03g03200
Os.17325.1.S1_at--443--7431Chr03:1336263..1336287 (25 bp)
GTGTACAACACGACCGTTCACTGTA
LOC_Os03g03200
Os.17325.1.S1_at--337--5531Chr03:1336325..1336349 (25 bp)
GAAACATTTGTGCTTCGGCCTCCTG
LOC_Os03g03200
Os.17325.1.S1_at--713--6711Chr03:1336376..1336400 (25 bp)
GTTCGGCAGATGCATGCTTGTCATT
LOC_Os03g03200
Os.17325.1.S1_at--1070--7671Chr03:1336407..1336431 (25 bp)
GGGTTTCCCATTTGTGAGCTGTGAG
LOC_Os03g03200
Os.17325.1.S1_at--857--7731Chr03:1336440..1336464 (25 bp)
GGTGGTTTCGTCGTGTGAATTTCCA
LOC_Os03g03200
Os.17325.1.S1_at--111--3131Chr03:1336457..1336481 (25 bp)
AATTTCCACAGGTGCGCATCGGTGA
LOC_Os03g03200
Os.17325.1.S1_at--1162--3171Chr03:1336500..1336524 (25 bp)
CAATTCGAATCATCTGGCTATCAGG
LOC_Os03g03200
Target Sequence 
GAAGCAGCAGTTCGCCGTATGACACTCGCTGCCTGGCCGTTGCAGTCGGACACAAACTGAATGCCACGGCATGGCAGGGC
CCTGCAGGGTTCGTTCCTCCGGTCTCAATTTTTGGTTCAAGTAGATGTGTACAACACGACCGTTCACTGTACCTCAAGTG
AAAAATAGTGTAAAGAAGATGTAAATACGAAACATTTGTGCTTCGGCCTCCTGCAGTCAATGCAAAAATAGGATGAGCCG
TTCGGCAGATGCATGCTTGTCATTTTTGGTGGGTTTCCCATTTGTGAGCTGTGAGACGGAGGGGGTGGTTTCGTCGTGTG
AATTTCCACAGGTGCGCATCGGTGACGATGCACATGATTGGATCAATTCGAATCATCTGGCTATCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17325.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis