Browse Element(s) Details


Os.18046.1.S1_at

Description gb:AK109528.1
DB_XREF= gi:32994737
TID=Os.18046.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.18046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-116-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-116-C04, full insert sequence.
FL= gb:AK109528.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3740011/11ZF-HD protein dimerisation region containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g37390Os.47947.1.A1_at11/118+23515166..23518230Cyclin, N-terminal domain containing protein, expressed
LOC_Os08g37400Os.18046.1.S1_at11/118+23530649..23532599ZF-HD protein dimerisation region containing protein, expressed
LOC_Os08g37410OsAffx.6058.1.S1_at10/118+23536122..23538314hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18046.1.S1_at--902--4731Chr08:23531089..23531113 (25 bp)
GCTGCACGGTTTGTTTGTTTCATCA
LOC_Os08g37400
Os.18046.1.S1_at--671--10391Chr08:23531060..23531084 (25 bp)
TTTTCCCCTATATTTCTTGTGCTTG
LOC_Os08g37400
Os.18046.1.S1_at--440--7331Chr08:23531042..23531066 (25 bp)
GTGCTTGGCACTTCATCATCAGTAG
LOC_Os08g37400
Os.18046.1.S1_at--648--5111Chr08:23531018..23531042 (25 bp)
GCACTTGTAGTTCGTCTAGCTAACA
LOC_Os08g37400
Os.18046.1.S1_at--15--2191Chr08:23530942..23530966 (25 bp)
ACACTGTTGCATTCACATCGATCTC
LOC_Os08g37400
Os.18046.1.S1_at--345--10531Chr08:23530865..23530889 (25 bp)
TTCACCTGTCTACTCTGAAATTCCA
LOC_Os08g37400
Os.18046.1.S1_at--881--3151Chr08:23530847..23530871 (25 bp)
AATTCCAATTTCTCTAGCTACCATG
LOC_Os08g37400
Os.18046.1.S1_at--624--10011Chr08:23530833..23530857 (25 bp)
TAGCTACCATGTTCGCTGCATTTTT
LOC_Os08g37400
Os.18046.1.S1_at--1134--9051Chr08:23530817..23530841 (25 bp)
TGCATTTTTCTTCCGAGTTCTCGAT
LOC_Os08g37400
Os.18046.1.S1_at--678--4551Chr08:23530730..23530754 (25 bp)
GCCCATGTGTTAGGACGCAGAGCTT
LOC_Os08g37400
Os.18046.1.S1_at--803--5211Chr08:23530657..23530681 (25 bp)
GAATTCAATGAAGCCTCGTCCTCTC
LOC_Os08g37400
Target Sequence 
GCTGCACGGTTTGTTTGTTTCATCATTTCTTTTCCCCTATATTTCTTGTGCTTGGCACTTCATCATCAGTAGCACTTGTA
GTTCGTCTAGCTAACAACTAGGGCAGATAAAGATTCAGAAAGGTCGGCTGCAACTATATGAGCTGCAACACTGTTGCATT
CACATCGATCTCCCTCGCTTCCAATTTCCAGACCTGGGCACCAACTTGTCCATGATCCGTCCGCTTCACCTGTCTACTCT
GAAATTCCAATTTCTCTAGCTACCATGTTCGCTGCATTTTTCTTCCGAGTTCTCGATCTCACTGTATCCGCTGCATTTAC
TCGTCTTCCACATCTCGCGAGCAGTGATGCCGCATTGCTGCCCATGTGTTAGGACGCAGAGCTTGCAGAAGCTATAGCAA
TGGCCGGGGACTTTTTAGAATTTAGTCTATGTGAATTCAATGAAGCCTCGTCCTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis