Browse Element(s) Details


Os.18316.1.S1_at

Description gb:AK073557.1
DB_XREF= gi:32983580
TID=Os.18316.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.18316 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033046C19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033046C19, full insert sequence.
FL= gb:AK073557.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2586011/11protein kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g25800Os.25589.3.S1_x_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25800Os.25589.3.S1_at11/1111+14212973..14214293PB1 domain containing protein, expressed
LOC_Os11g25810NANA11+14218586..14221617retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g25820NANA11+14225783..14226127hypothetical protein
LOC_Os11g25830NANA11+14226948..14228538retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g25840NANA11+14231266..14231787hypothetical protein
LOC_Os11g25850NANA11+14232610..14235100transposon protein, putative, unclassified
LOC_Os11g25860Os.18316.1.S1_at11/1111+14237401..14240211protein kinase family protein, putative, expressed
LOC_Os11g25870NANA11+14242076..14242776hypothetical protein
LOC_Os11g25874NANA11+14247701..14249116hypothetical protein
LOC_Os11g25880OsAffx.19020.1.S1_at10/1111+14250021..14253337hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18316.1.S1_at--456--4971Chr11:14239699..14239723 (25 bp)
GCATCTTCGGCTACATGTCGCCGGA
LOC_Os11g25860
Os.18316.1.S1_at--472--1171Chr11:14239723..14239747 (25 bp)
AGTACATGGAGACCGGCGAGGCCAC
LOC_Os11g25860
Os.18316.1.S1_at--942--7511Chr11:14239859..14239883 (25 bp)
GTGGAAGGAGCAGAGCCGCCCCGTC
LOC_Os11g25860
Os.18316.1.S1_at--488--8271Chr11:14239953..14239977 (25 bp)
GGCATGGCGTGCACCCAGTCTGACC
LOC_Os11g25860
Os.18316.1.S1_at--685--851Chr11:14239956..14239980 (25 bp)
ATGGCGTGCACCCAGTCTGACCCGG
LOC_Os11g25860
Os.18316.1.S1_at--237--8232Chr11:14240022..14240046 (25 bp)
GGCAATGACGAGATCTTGAAGAAAT
LOC_Os11g25860
Os.18316.1.S1_at--1057--6031Chr11:14240031..14240055 (25 bp)
GAGATCTTGAAGAAATTCGAGCAGA
LOC_Os11g25860
Os.18316.1.S1_at--548--7231Chr11:14240105..14240129 (25 bp)
GTCCTTAGTAAGAAGACTCCATGCT
LOC_Os11g25860
Os.18316.1.S1_at--1114--9771Chr11:14240113..14240137 (25 bp)
TAAGAAGACTCCATGCTCTTGCGAT
LOC_Os11g25860
Os.18316.1.S1_at--759--9571Chr11:14240129..14240153 (25 bp)
TCTTGCGATACACTGAACACAACGT
LOC_Os11g25860
Os.18316.1.S1_at--318--4631Chr11:14240133..14240157 (25 bp)
GCGATACACTGAACACAACGTCAAT
LOC_Os11g25860
Target Sequence 
GCATCTTCGGCTACATGTCGCCGGAGTACATGGAGACCGGCGAGGCCACCNCCATGGCCGACGTCTACAGCTTCGGCGTG
GTGGTGCTGGAGGTGGTGACCGGCGAGATGGCGGTGGACGTGAGGTCGCCGGAGGTCCTTCTTGTCAGGAGAGCGCAGCG
GTGGAAGGAGCAGAGCCGCCCCGTCGAGGCCATCGTGGACAGACGGCTGGACGGCCAGGTTGATCGCCCGGAGCTCGAGC
GGTTGGTGAGGCTCGGCATGGCGTGCACCCAGTCTGACCCGGCGGCGCGACCGACGATGAGGAAGATAGTGAGCATCATG
GATGGCAATGACGAGATCTTGAAGAAATTCGAGCAGAGGAAGCAGCAGAGCAAGGAAGAGTGGGAGACCANAAATGCTGC
TGCTCTGTCCTTAGTAAGAAGACTCCATGCTCTTGCGATACACTGAACACAACGTCAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18316.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis