Browse Element(s) Details


Os.18550.1.S1_at

Description gb:AK102939.1
DB_XREF= gi:32988148
TID=Os.18550.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18550 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033114K02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033114K02, full insert sequence.
FL= gb:AK102939.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5672011/11Regulator of chromosome condensation family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative
LOC_Os04g56710Os.21764.1.S1_at11/114+33595092..33599676GTP cyclohydrolase I family protein, expressed
LOC_Os04g56720Os.18550.1.S1_at11/114+33603380..33609512Regulator of chromosome condensation family protein, expressed
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed
LOC_Os04g56750Os.6398.1.S1_at11/114+33629552..33634920Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009411biological_processresponse to UV
GO:0003682molecular_functionchromatin binding
GO:0005085molecular_functionguanyl-nucleotide exchange factor activity
GO:0008536molecular_functionRan GTPase binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18550.1.S1_at--1103--671Chr04:33608420..33608443 (24 bp)
ATGACGGTGATACCTCCACTGAAGT
LOC_Os04g56720
Os.18550.1.S1_at--445--2131Chr04:33608964..33608988 (25 bp)
ACAGAGTGGAGGTCCAGGTTGCCAA
LOC_Os04g56720
Os.18550.1.S1_at--339--9491Chr04:33608996..33609020 (25 bp)
TCTGCTAGCACCAATGCACGATCTA
LOC_Os04g56720
Os.18550.1.S1_at--245--10031Chr04:33609124..33609148 (25 bp)
TAGACGTGGCCGCAAACCTTCAAAC
LOC_Os04g56720
Os.18550.1.S1_at--657--5371Chr04:33609220..33609244 (25 bp)
GAAGAAAACCGAGTCTCCTGCTCAG
LOC_Os04g56720
Os.18550.1.S1_at--239--7591Chr04:33609319..33609343 (25 bp)
GGGCATTGTTGAACTCAGATCGTGT
LOC_Os04g56720
Os.18550.1.S1_at--826--6391Chr04:33609336..33609360 (25 bp)
GATCGTGTGATTGTCTAACTCCTGA
LOC_Os04g56720
Os.18550.1.S1_at--1120--10811Chr04:33609346..33609370 (25 bp)
TTGTCTAACTCCTGATGCGATCCAA
LOC_Os04g56720
Os.18550.1.S1_at--1099--2591Chr04:33609369..33609393 (25 bp)
AACCCAGCCATTCAAGGGCATTTGT
LOC_Os04g56720
Os.18550.1.S1_at--283--1491Chr04:33609400..33609424 (25 bp)
AGCAATGGTTTCTTACTCTTGCCCG
LOC_Os04g56720
Os.18550.1.S1_at--203--4171Chr04:33609423..33609447 (25 bp)
CGCCTTACATTGTTGAGCCTGTTTT
LOC_Os04g56720
Target Sequence 
ATGACGGTGATACCTCCACTGAAGTAGAAGACAGAGTGGAGGTCCAGGTTGCCAAGAAGGCATCTGCTAGCACCAATGCA
CGATCTAACAAGCGCAAGAAAACCAAGGATGTTTCNGAATCAGAAGAGGATGATGATGAGGAAGATGATAGCGACGACGA
TGAAAATGGTGAAATAAAAGGTGGTAAGGGTAGACGTGGCCGCAAACCTTCAAACAGAGGGAGAGGCAGGGGAGCTAAAA
AGGCAACTCCTGAGCCAAAGCCATCTGCAAGGGGCAGAGGCCGCCCGAAGAAAACCGAGTCTCCTGCTCAGAAAACTGGG
AGCTTGGGGCGAGGCGGGAAGAGGGGGAAGCGAGGAAGAGCTCGGAAGTGAGTTTAAACCAAGTAGGGCATTGTTGAACT
CAGATCGTGTGATTGTCTAACTCCTGATGCGATCCAACCCAGCCATTCAAGGGCATTTGTTTTCTTAGCAATGGTTTCTT
ACTCTTGCCCGCCTTACATTGTTGAGCCTGTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18550.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis