Browse Element(s) Details


Os.19061.1.S1_s_at

Description gb:AK099499.1
DB_XREF= gi:32984708
TID=Os.19061.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013028A12, full insert sequence.
FL= gb:AK099499.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2805011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060Os.15845.2.S1_at11/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_x_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28070NANA6+15937011..15941287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19061.1.S1_s_at--1125--5971Chr06:15917023..15917047 (25 bp)
GAGACATTCGCGATGGACGATGTTC
LOC_Os06g28050
Os.19061.1.S1_s_at--739--5771Chr06:15917008..15917032 (25 bp)
GACGATGTTCTTGGAAGCGCTCACG
LOC_Os06g28050
Os.19061.1.S1_s_at--702--2671Chr06:15916994..15917018 (25 bp)
AAGCGCTCACGTCGAAGTCCAGTTT
LOC_Os06g28050
Os.19061.1.S1_s_at--96--7231Chr06:15916984..15917008 (25 bp)
GTCGAAGTCCAGTTTGGAGACCAGG
LOC_Os06g28050
Os.19061.1.S1_s_at--626--9871Chr06:15916565..15916587 (23 bp)
TACAGGTAGCTGTGGAGTCGTGCCC
LOC_Os06g28050
Os.19061.1.S1_s_at--832--8551Chr06:15916553..15916577 (25 bp)
TGGAGTCGTGCCCAGTGAACTGCAT
LOC_Os06g28050
Os.19061.1.S1_s_at--824--9111Chr06:15916499..15916523 (25 bp)
TGCTGGAGTTCCTGGCACGGCCACA
LOC_Os06g28050
Os.19061.1.S1_s_at--550--3311Chr06:15916478..15916502 (25 bp)
CACAGCAGAAGGAAGCGCACGGCGT
LOC_Os06g28050
Os.19061.1.S1_s_at--897--8111Chr06:15916426..15916450 (25 bp)
GGACGTGTTCGCTGCGGCCAACAAC
LOC_Os06g28050
Os.19061.1.S1_s_at--301--10531Chr06:15916401..15916425 (25 bp)
TTCACCAAGAGGCTCCAGAGAGAGG
LOC_Os06g28050
Os.19061.1.S1_s_at--593--851Chr06:15916365..15916389 (25 bp)
ATGGCACGGCAGCAACGCTACAATA
LOC_Os06g28050
Target Sequence 
GAGACATTCGCGATGGACGATGTTCTTGGAAGCGCTCACGTCGAAGTCCAGTTTGGAGACCAGGAGCAGAAGATACAGGT
AGCTGTGGAGTCGTGCCCAGTGAACTGCATCCACTGGNTGATGAGCGAGGAGCTAGCGGTGCTGGAGTTCCTGGCACGGC
CACAGCAGAAGGAAGCGCACGGCGTGTTCGGCGGCGGGTGGGAGAGGCCCCGGGACGTGTTCGCTGCGGCCAACAACTTC
ACCAAGAGGCTCCAGAGAGAGGAGCNACAGGACATGGCACGGCAGCAACGCTACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19061.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis