Browse Element(s) Details


Os.19061.2.S1_at

Description gb:AK111525.1
DB_XREF= gi:37988188
TID=Os.19061.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19061 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013028A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013022M11, full insert sequence.
FL= gb:AK111525.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2805011/11DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os12g179301/11hypothetical protein
LOC_Os08g359001/11F-box domain containing protein, expressed
LOC_Os06g388701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28000Os.14208.1.S1_at11/116+15890358..15894672Carboxyl-terminal proteinase, putative, expressed
LOC_Os06g28010NANA6+15900365..15901077retrotransposon, putative, centromere-specific
LOC_Os06g28020NANA6+15902547..15904690retrotransposon, putative, centromere-specific
LOC_Os06g28030OsAffx.27843.1.S1_at11/116+15905024..15906173hypothetical protein
LOC_Os06g28040OsAffx.27844.1.S1_at10/116+15909858..15911273hypothetical protein
LOC_Os06g28050Os.19061.2.S1_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_s_at11/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28050Os.19061.1.S1_at10/116+15914521..15917811DNAJ heat shock N-terminal domain-containing protein, putative, expressed
LOC_Os06g28060Os.15845.2.S1_at11/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_x_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28060Os.15845.1.S1_at10/116+15922001..15932071ATPase, histidine kinase, DNA gyrase B-, and HSP90-like domain containing protein, expressed
LOC_Os06g28070NANA6+15937011..15941287hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19061.2.S1_at--813--7211Chr06:15915433..15915457 (25 bp)
GTCGCTTTGAATTTTAACCTAGCCA
LOC_Os06g28050
Os.19061.2.S1_at--298--7034Chr12:26755966..26755985 (20 bp)
GTAAATTGCATTTAGGGCCACCTTT
NONE
Os.19061.2.S1_at--346--8656Chr12:26755973..26755997 (25 bp)
TAGGGCCACCTTTTATCACCAAAGT
NONE
Os.19061.2.S1_at--529--1734Chr06:23065994..23066027 (25 bp)
ACCATTTTTTCACTTTGGACTAGAT
LOC_Os06g38870
Os.19061.2.S1_at--408--8132Chr05:1524137..1524161 (25 bp)
GGACTAGATTAGTTTGCCTCTGTTT
NONE
Os.19061.2.S1_at--1156--4195Chr11:22043939..22043962 (24 bp)
CCCCAAAAACTTTTCTCGAGCACAT
NONE
Os.19061.2.S1_at--984--5674Chr05:1524203..1524227 (25 bp)
GACTTTAACCACATCGGCACCCATA
NONE
Os.19061.2.S1_at--641--8251Chr06:15915160..15915184 (25 bp)
GGCACCCATAAACCAATAATCTTTC
LOC_Os06g28050
Os.19061.2.S1_at--473--7836Chr11:4735326..4735349 (24 bp)
GGTAATCTTACCTAGTCTAAAGTGA
NONE
Os.19061.2.S1_at--699--3113Chr10:11246457..11246860 (25 bp)
AATATTAGCTAGAGGGTGGTTCAAA
NONE
Os.19061.2.S1_at--497--74910Chr11:2509181..2509203 (23 bp)
GTGGACCAAAGTGCAATTAACTCTA
NONE
Target Sequence 
GTCGCTTTGAATTTTAACCTAGCCAAACTTATTTAAGTTTAATCAAATTTATAGAAAAATTTAGCAACATCTACATAGAA
AATTAGTTTCATCAAATTGAGCATTAAATATATTTGAGTAAATTGCATTTAGGGCCACCTTTTATCACCAAAGTTCCACT
TTGGACTACCCTTTAAACCATTTTTTCACTTTGGACTAGATTAGTTTGCCTCTGTTTCACTTTGAACCACCCCAAAAACT
TTTCTCGAGCACATAAATGACTTTAACCACATCGGCACCCATAAACCAATAATCTTTCCGACTTATATATAGACTATTCT
TCGTAAGATTAGAGGGTAGATGTAGCTAGAAAAGTGACTTGGGGTGGTCCAAACTGTAACAAAGGTAATCTTACCTAGTC
TAAAGTGAAAATATTAGCTAGAGGGTGGTTCAAAGTGAAACTTTGGTAATAAAATGTGGACCAAAGTGCAATTAACTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19061.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis