Browse Element(s) Details


Os.20001.1.S1_at

Description gb:AK108276.1
DB_XREF= gi:32993485
TID=Os.20001.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.20001 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-141-C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-C08, full insert sequence.
FL= gb:AK108276.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g320806/11steroleosin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32050Os.15041.1.S1_a_at11/114+19033410..19037973transposon protein, putative, unclassified, expressed
LOC_Os04g32060Os.55758.1.S1_at10/114+19040724..19044486transposon protein, putative, unclassified, expressed
LOC_Os04g32070Os.54991.1.S1_at11/114+19045745..19047749oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g32080Os.20001.1.S1_at6/114+19049260..19051632steroleosin, putative, expressed
LOC_Os04g32090OsAffx.14080.1.S1_at11/114+19053045..19058577expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20001.1.S1_at--98--3911Chr04:19051491..19051515 (25 bp)
CTGGAGTTGTGTGCTGCCCGGCTTT
LOC_Os04g32080
Os.20001.1.S1_at--479--3831Chr04:19051504..19051528 (25 bp)
CTGCCCGGCTTTGGCTAGCTAGCTA
LOC_Os04g32080
Os.20001.1.S1_at--76--4871Chr04:19051525..19051549 (25 bp)
GCTAGCTTCGTCGTATTGAGTTTTG
LOC_Os04g32080
Os.20001.1.S1_at--456--10231Chr04:19051538..19051562 (25 bp)
TATTGAGTTTTGGTCTTCTCTTTCT
LOC_Os04g32080
Os.20001.1.S1_at--747--7171Chr04:19051578..19051602 (25 bp)
GTCTGTATGTAATAAACGTGTTCCA
LOC_Os04g32080
Os.20001.1.S1_at--786--2371Chr04:19051591..19051615 (25 bp)
AAACGTGTTCCAGGGTGATTTTCAT
LOC_Os04g32080
Os.20001.1.S1_at--357--8751Chr04:19051617..19051641 (25 bp)
TGTTAGGAATACTCCTACCTCGGTC
NONE
Os.20001.1.S1_at--525--9211Chr04:19051629..19051653 (25 bp)
TCCTACCTCGGTCTCAAAATATAAG
NONE
Os.20001.1.S1_at--969--2851Chr09:6812483..6812773 (25 bp)
AAGTGTCGGTTTTTACCAGCACCAT
NONE
Os.20001.1.S1_at--816--7871NONE
GGTTTTTACCAGCACCATGGAGGTG
NONE
Os.20001.1.S1_at--748--4831NONE
GCTCAAACTTGAGCCGAGATGATGC
NONE
Target Sequence 
CTGGAGTTGTGTGCTGCCCGGCTTTGGCTAGCTAGCTAGCTTCGTCGTATTGAGTTTTGGTCTTCTCTTTCTCAACANCA
GCCTGCAGTCTGTATGTAATAAACGTGTTCCAGGGTGATTTTCATTTGTTAGGAATACTCCTACCTCGGTCTCAAAATAT
AAGATAGCACTACTTAAAAAAACCTTAATAGGTGTTAGTTGGAAAACCCTATAAGTGTCGGTTTTTACCAGCACCATGGA
GGTGGTACTGATTAGAGATACGATTTTAAAAAAAACCCGGCTTTGCTCAAACTTGAGCCGAGATGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20001.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis