Browse Element(s) Details


Os.2120.2.S1_x_at

Description gb:NM_193789.1
DB_XREF= gi:34914661
GEN=P0504D03.22
TID=Os.2120.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.2120 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative ribosomal protein (P0504D03.22), mRNA.
PROD=putative ribosomal protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3305011/11ribosome biogenesis protein RLP24, putative, expressed
LOC_Os07g191901/11ribosome biogenesis protein RLP24, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33020Os.2118.1.S1_at9/111+18462138..18465157Sybindin-like family protein, expressed
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed
LOC_Os01g33050Os.2120.1.S1_a_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.2.S1_x_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.1.S1_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33060Os.45981.1.S1_at11/111+18490755..18500776HEAT repeat family protein, expressed
LOC_Os01g33070NANA1+18503381..18504722pentatricopeptide, putative
LOC_Os01g33080Os.40687.1.S1_at11/111+18513831..18520220Fimbrin-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2120.2.S1_x_at--18--1291Chr01:18486449..18486473 (25 bp)
AGATCTTCCGCTTTTGCCGGTCAAA
LOC_Os01g33050
Os.2120.2.S1_x_at--274--1052Chr07:11359838..11359858 (21 bp)
AGGTGACTCCACCTTTGAGTTTGAG
LOC_Os07g19190
Os.2120.2.S1_x_at--860--3411Chr01:18486196..18486220 (25 bp)
CAGACCAGAGCGCTATGACCGGAAT
LOC_Os01g33050
Os.2120.2.S1_x_at--20--8211Chr01:18486176..18486200 (25 bp)
GGAATGTCACTGCACAAACTCTTAA
LOC_Os01g33050
Os.2120.2.S1_x_at--481--1331Chr01:18486095..18486119 (25 bp)
AGAGGTTGGCATCTGTTCTTTTGGC
LOC_Os01g33050
Os.2120.2.S1_x_at--966--8771Chr01:18486082..18486106 (25 bp)
TGTTCTTTTGGCTCAGTCTGTTAAT
LOC_Os01g33050
Os.2120.2.S1_x_at--989--8311Chr01:18486073..18486097 (25 bp)
GGCTCAGTCTGTTAATTCTTGAAAT
LOC_Os01g33050
Os.2120.2.S1_x_at--908--5591Chr01:18486053..18486077 (25 bp)
GAAATTATCTCTTTGCTTAACATAT
LOC_Os01g33050
Os.2120.2.S1_x_at--1117--4871Chr01:18486039..18486063 (25 bp)
GCTTAACATATGCACTGAACTTTTA
LOC_Os01g33050
Os.2120.2.S1_x_at--356--7811Chr01:18485902..18485926 (25 bp)
GGTCGTGGTCAAAGTTTCTCAGCAG
LOC_Os01g33050
Os.2120.2.S1_x_at--230--8211Chr01:18485841..18485865 (25 bp)
GGAATCATGTTGCATGCGCTCTCAT
LOC_Os01g33050
Target Sequence 
AGATCTTCCGCTTTTGCCGGTCAAAATGCCATAAAAATTTTAAGATGAAGAGGAATCCTCGTAAGGTTAAATGGACAAAA
GCATACAGATGCTTGCATGGGAAGGACATGACGCAGGTGACTCCACCTTTGAGTTTGAGAGGAAGAGGAACAGACCAGAG
CGCTATGACCGGAATGTCACTGCACAAACTCTTAAGGCTATCCCTCTTATTACAAAGATTAGACATGAACGCCATAAAAA
ACATATTACAGAGAGGTTGGCATCTGTTCTTTTGGCTCAGTCTGTTAATTCTTGAAATTATCTCTTTGCTTAACATATGC
ACTGAACTTTTAACAGGCAAAAACAGGGTAAGACAAAGCAAAGGGAGAGAGATGCTAAGGAGTTGGAACAGGATATTCAA
ATGCTCCCGAAGAAGGATACCATGCTGTCAACACAAAAGACAAAGGTCGTGGTCAAAGTTTCTCAGCAGCAGACCGAAGA
AAATCTTATGGAAGAGTAATGAAATGGAATCATGTTGCATGCGCTCTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2120.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis