Browse Element(s) Details


Os.21764.1.S1_at

Description gb:AK069126.1
DB_XREF= gi:32979150
TID=Os.21764.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007K22, full insert sequence.
FL= gb:AK069126.1 gb:AK105717.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5671011/11GTP cyclohydrolase I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g56680Os.55358.1.S1_at11/114+33570364..33571315Auxin responsive protein, expressed
LOC_Os04g56690Os.55720.1.S1_at11/114+33585356..33586405Auxin responsive protein, expressed
LOC_Os04g56700OsAffx.14440.1.S1_at10/114+33590548..33593234Naringenin,2-oxoglutarate 3-dioxygenase, putative
LOC_Os04g56710Os.21764.1.S1_at11/114+33595092..33599676GTP cyclohydrolase I family protein, expressed
LOC_Os04g56720Os.18550.1.S1_at11/114+33603380..33609512Regulator of chromosome condensation family protein, expressed
LOC_Os04g56730Os.4682.1.S1_a_at11/114+33609877..33613506Repressor of RNA polymerase III transcription MAF1 homolog, putative, expressed
LOC_Os04g56740Os.5514.1.S1_at11/114+33620948..33626839IQ calmodulin-binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0003934molecular_functionGTP cyclohydrolase I activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21764.1.S1_at--945--5151Chr04:33595612..33595636 (25 bp)
GCAACGATTGCAGTTCTGGGTCAGT
LOC_Os04g56710
Os.21764.1.S1_at--755--7091Chr04:33595593..33595617 (25 bp)
GTCAGTTTTTGACGGACCCTTCTGC
LOC_Os04g56710
Os.21764.1.S1_at--446--3211Chr04:33595568..33595592 (25 bp)
CAAGGCACGCTTTCTGCAGAACGTA
LOC_Os04g56710
Os.21764.1.S1_at--476--8951Chr04:33595438..33595462 (25 bp)
TGAAAGTTGGTACCCAGTTCGGTGT
LOC_Os04g56710
Os.21764.1.S1_at--251--6711Chr04:33595422..33595446 (25 bp)
GTTCGGTGTGTTACCGGCAAACATT
LOC_Os04g56710
Os.21764.1.S1_at--524--2511Chr04:33595403..33595427 (25 bp)
AACATTGCCCATTGGTTCGAGACCG
LOC_Os04g56710
Os.21764.1.S1_at--396--7791Chr04:33595373..33595397 (25 bp)
GGTGCCACGTCTCTCTGGAAGGAAA
LOC_Os04g56710
Os.21764.1.S1_at--940--5511Chr04:33595352..33595376 (25 bp)
GAAAATGTCCATTTGCTTGGTGAGG
LOC_Os04g56710
Os.21764.1.S1_at--542--8811Chr04:33595255..33595279 (25 bp)
TGTTGTACCATTTTTCATTTGCACG
LOC_Os04g56710
Os.21764.1.S1_at--632--10271Chr04:33595238..33595262 (25 bp)
TTTGCACGGCACTTGAAATCTATAC
LOC_Os04g56710
Os.21764.1.S1_at--1113--31Chr04:33595093..33595117 (25 bp)
ATTGTTCTCTTGAGTGTTGACCCGC
LOC_Os04g56710
Target Sequence 
GCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAAC
TGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCNGCAG
CCACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCT
GGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAG
CTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGTACCATTTTTCATTTGCACGGCACTTGAAATCTATAC
TGCACTANTTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCNCATCATTTTTCACTGTAGNAAATTT
TGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTGTTGACCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis