Browse Element(s) Details


Os.2232.1.S1_a_at

Description gb:AY335488.1
DB_XREF= gi:33113258
GEN=Eno1
TID=Os.2232.1
CNT=142
FEA=FLmRNA
TIER=FL+Stack
STK=52
UG=Os.2232 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) enolase (Eno1) mRNA, complete cds.
PROD=enolase
FL= gb:AY335488.1 gb:AK099292.1 gb:AK073662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0855011/11Enolase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein
LOC_Os10g08530OsAffx.6604.1.S1_at11/1110+4391306..4394368hypothetical protein
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0009416biological_processresponse to light stimulus
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0004634molecular_functionphosphopyruvate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2232.1.S1_a_at--458--6611Chr10:4406512..4406647 (25 bp)
GTTGGTTTGGCCACGGGTCAGATCA
LOC_Os10g08550
Os.2232.1.S1_a_at--237--6871Chr10:4406508..4406643 (25 bp)
GTTTGGCCACGGGTCAGATCAAGAC
LOC_Os10g08550
Os.2232.1.S1_a_at--17--4051Chr10:4406470..4406494 (25 bp)
CGATCAGAGCGCCTTGCCAAATACA
LOC_Os10g08550
Os.2232.1.S1_a_at--1005--7491Chr10:4406077..4406101 (25 bp)
GTGGAGCCCTACTAAACTTGATGGT
LOC_Os10g08550
Os.2232.1.S1_a_at--930--3471Chr10:4406047..4406071 (25 bp)
CAGGATGCTCATTTCTATCCGTAAT
LOC_Os10g08550
Os.2232.1.S1_a_at--772--191Chr10:4406037..4406061 (25 bp)
ATTTCTATCCGTAATTGACTTCCCG
LOC_Os10g08550
Os.2232.1.S1_a_at--388--8951Chr10:4406022..4406046 (25 bp)
TGACTTCCCGGTCGAACTCTAGTTA
LOC_Os10g08550
Os.2232.1.S1_a_at--915--5971Chr10:4405981..4406005 (25 bp)
GAGAAATAAATCCTCCACTGTATGA
LOC_Os10g08550
Os.2232.1.S1_a_at--148--2271Chr10:4405974..4405998 (25 bp)
AAATCCTCCACTGTATGAGCGGATA
LOC_Os10g08550
Os.2232.1.S1_a_at--914--631Chr10:4405960..4405984 (25 bp)
ATGAGCGGATATGTACCCCCAAACT
LOC_Os10g08550
Os.2232.1.S1_a_at--629--3631Chr10:4405937..4405961 (25 bp)
CTTGCTCCAATTTTGGTGATGTGTA
LOC_Os10g08550
Target Sequence 
GTTGGTTTGGCCACGGGTCAGATCAAGACTGGAGCACCCTGCCGATCAGAGCGCCTTGCCAAATACAACCAGCTTCTTAG
GATTGAGGAGGAGCTTGGTGCGGCTGCTGTCTACGCTGGTGCCAAGTTCCGCGCACCCGTGGAGCCCTACTAAACTTGAT
GGTGAAGACAGGATGCTCATTTCTATCCGTAATTGACTTCCCGGTCGAACTCTAGTTAAAAAGCTCGTAGAATCGAGAAA
TAAATCCTCCACTGTATGAGCGGATATGTACCCCCAAACTTGCTCCAATTTTGGTGATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2232.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis