Browse Element(s) Details


Os.23185.1.S1_at

Description gb:NM_195030.1
DB_XREF= gi:37531419
TID=Os.23185.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.23185 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative cytochrome P450 (OSJNBb0015J03.2), mRNA.
PROD=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0854010/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08490NANA10+4371504..4371790hypothetical protein
LOC_Os10g08500OsAffx.30340.1.S1_x_at11/1110+4378377..4379063hypothetical protein
LOC_Os10g08510NANA10+4379981..4381020hypothetical protein
LOC_Os10g08520OsAffx.18173.1.S1_at9/1110+4386305..4387552hypothetical protein
LOC_Os10g08530OsAffx.6604.1.S1_at11/1110+4391306..4394368hypothetical protein
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23185.1.S1_at--1150--2271Chr10:4401418..4401442 (25 bp)
AAATGTCTGGGCTATGGGTCGAGAT
LOC_Os10g08540
Os.23185.1.S1_at--391--4711Chr10:4401542..4401566 (25 bp)
GCTGGAAGACGGATCTGCCCTGGAT
LOC_Os10g08540
Os.23185.1.S1_at--208--3871Chr10:4401576..4401600 (25 bp)
CTGTTAGGATGGTCCATGTGGTTCT
LOC_Os10g08540
Os.23185.1.S1_at--990--7511Chr10:4401625..4401649 (25 bp)
GTGGAGACTCCCAGTCAAGGTCGAA
LOC_Os10g08540
Os.23185.1.S1_at--452--5511Chr10:4401671..4401872 (25 bp)
GAAAAGTTTGGTTTGCTTCAGTCCA
LOC_Os10g08540
Os.23185.1.S1_at--417--7951Chr10:4401880..4401904 (25 bp)
GGATAGGTCTGATTTGGCATATGTT
LOC_Os10g08540
Os.23185.1.S1_at--467--9731NONE
TCAAGGATCTTATGGGCGCTGCAGC
NONE
Os.23185.1.S1_at--1158--10671Chr10:4402759..4402783 (25 bp)
TTCCTTCTCCTAGGGTGAGGAAATC
LOC_Os10g08540
Os.23185.1.S1_at--1096--571Chr10:4402781..4402805 (25 bp)
ATCCAAGTGTGAGGAAGCCCATGTT
LOC_Os10g08540
Os.23185.1.S1_at--246--2191Chr10:4402842..4402866 (25 bp)
ACAAAGCACGGCCTCACCGATTATG
LOC_Os10g08540
Os.23185.1.S1_at--1148--3351Chr10:4402856..4402880 (25 bp)
CACCGATTATGTCGCTAGTTGTGAT
LOC_Os10g08540
Target Sequence 
AAATGTCTGGGCTATGGGTCGAGATAAAGACATATGGCCAGAGGCAGAGAAGTTTATGCCGGAGAGATTTCTAGAAAGGG
CAACTGACTTTAAAGGTGCGGATTTTGAGCTCATTCCATTCGGAGCTGGAAGACGGATCTGCCCTGGATTGCCATTAGCT
GTTAGGATGGTCCATGTGGTTCTTGCATCACTACTAATTAATTTCAAGTGGAGACTCCCAGTCAAGGTCGAAAGAGATGG
AGTTAATATGACAGAAAAGTTTGGTTTGCTTCAGTCCAAGGAGAAGGATAGGTCTGATTTGGCATATGTTATCAATGCAG
TCAAGGATCTTATGGGCGCTGCAGCCGCCACCACCGCCACCAACCTCACCATCCTTCCTTCTCCTAGGGTGAGGAAATCC
AAGTGTGAGGAAGCCCATGTTATGCCCACCACCGCAAAGCTCCACACCCCCGCCACCACAAAGCACGGCCTCACCGATTA
TGTCGCTAGTTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis