Browse Element(s) Details


Os.24470.1.A1_at

Description gb:CA761867
DB_XREF= gi:25805906
DB_XREF=BR060013B11B03.ab1
CLONE=BR060013B11B03.ab1
TID=Os.24470.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24470 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g179201/11hypothetical protein
LOC_Os11g177701/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17900Os.54189.1.S1_at11/1112+10278319..10284123armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os12g17910Os.8007.1.S1_at11/1112+10291015..10295321RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed
LOC_Os12g17920OsAffx.32038.2.S1_at11/1112+10296940..10298139hypothetical protein
LOC_Os12g17920Os.24470.1.A1_at1/1112+10296940..10298139hypothetical protein
LOC_Os12g17930OsAffx.7627.1.S1_at11/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.23176.3.S1_x_at2/1112+10299624..10303523hypothetical protein
LOC_Os12g17930OsAffx.17424.1.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17930Os.19061.2.S1_at1/1112+10299624..10303523hypothetical protein
LOC_Os12g17940OsAffx.31791.1.S1_at11/1112+10307836..10308297hypothetical protein
LOC_Os12g17950OsAffx.31792.1.S1_at11/1112+10318250..10319272hypothetical protein
LOC_Os12g17960OsAffx.31793.1.S1_at11/1112+10321824..10322060hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24470.1.A1_at--503--3271NONE
CAAACCCTAGGTGTGGAGATATCTG
NONE
Os.24470.1.A1_at--727--3871NONE
CTGTCGGGTTGCTGTCGAGGTTAAA
NONE
Os.24470.1.A1_at--35--6831Chr08:8910563..8910587 (25 bp)
GTTTATGTCCGAGGATCATTTCGCT
NONE
Os.24470.1.A1_at--283--5051Chr08:8910680..8910704 (25 bp)
GCAGACCGGTTATGCATAGATGCTT
NONE
Os.24470.1.A1_at--551--10291Chr08:8910787..8910811 (25 bp)
TTTCACTTCCAATAAACGGCTCATC
NONE
Os.24470.1.A1_at--970--3531Chr08:8910808..8910832 (25 bp)
CATCGTTTCGACTTCCTATTAGAGA
NONE
Os.24470.1.A1_at--301--4751Chr08:8910865..8910889 (25 bp)
GCTGAAAGGCTCTATTGAACCTGCT
NONE
Os.24470.1.A1_at--719--10712Chr08:8910912..8910936 (25 bp)
TTGAGCTAGCCCACTTACCTTGAAT
NONE
Os.24470.1.A1_at--278--2431Chr08:8910940..8910964 (25 bp)
AAAAGCCATGTTTATCCCCATCTAG
NONE
Os.24470.1.A1_at--657--257Chr12:10297343..10297367 (25 bp)
ATATCCCCTATGTTTTATCATTTGG
LOC_Os12g17920
Os.24470.1.A1_at--843--10114Chr08:8911030..8911054 (25 bp)
TATGAACCCCTTTTGTTCAGCTGTG
NONE
Target Sequence 
CAAACCCTAGGTGTGGAGATATCTGGTGTGGAGGGTGGTCTGTCGGGTTGCTGTCGAGGTTAAAAGGTTTATGTCCGAGG
ATCATTTCGCTNCTACAACAATGAANGATTGCATAAAGGATGAGATGTATTGCACAGAAGATGGAGTGGCACTCACTCAA
GTGGAGATGGTTAACGACAANGAGCAGACCGGTTATGCATAGATGCTTCAACTTCTAAGGGGGTGTGTGACCCAGCCAGT
CAAATTCCTCCATGCATAATATATATGGTTCGAAAGATAATCAAGTCTAGTTTCACTTCCAATAAACGGCTCATCGTTTC
GACTTCCTATTAGAGAGTAATGTCTATTTTAGTGGAGGCTGCNCAAAAGCTGAAAGGCTCTATTGAACCTGCTCNGGAAT
GACTCATGGAGACNCTTGAGCTAGCCCACTTACCTTGAATTTCAAAAGCCATGTTTATCCCCATCTAGGAGGGGCTTTCC
TAGTATAAATATCCCCTATGTTTTATCATTTGGAAGACTTTTGACAATGAGAATATGAACCCCTTTTGTTCAGCTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24470.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis