Browse Element(s) Details


Os.27691.2.S1_at

Description gb:NM_195032.1
DB_XREF= gi:37531423
TID=Os.27691.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27691 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAb0015J03.10), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0856011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g318001/11hypothetical protein
LOC_Os10g138201/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.27691.2.S1_at--1084--9111Chr10:4420406..4420430 (25 bp)
TCTGGGCGTGGCACCGAACCTATAT
LOC_Os10g08560
Os.27691.2.S1_at--563--3891Chr10:4420407..4420431 (25 bp)
CTGGGCGTGGCACCGAACCTATATA
LOC_Os10g08560
Os.27691.2.S1_at--812--7571Chr10:4420409..4420433 (25 bp)
GGGCGTGGCACCGAACCTATATAAA
LOC_Os10g08560
Os.27691.2.S1_at--805--8351Chr10:4420410..4420434 (25 bp)
GGCGTGGCACCGAACCTATATAAAA
LOC_Os10g08560
Os.27691.2.S1_at--67--4671Chr10:4420411..4420435 (25 bp)
GCGTGGCACCGAACCTATATAAAAA
LOC_Os10g08560
Os.27691.2.S1_at--390--3991Chr10:4420412..4420436 (25 bp)
CGTGGCACCGAACCTATATAAAAAT
LOC_Os10g08560
Os.27691.2.S1_at--467--7533Chr10:4420413..4420437 (25 bp)
GTGGCACCGAACCTATATAAAAATC
LOC_Os10g08560
Os.27691.2.S1_at--1159--84974Chr12:26542929..26542948 (20 bp)
TGGCACCGAACCTATATAAAAATCC
NONE
Os.27691.2.S1_at--604--79337Chr12:2672150..2672170 (21 bp)
GGCACCGAACCTATATAAAAATCCA
NONE
Os.27691.2.S1_at--262--50927Chr12:2672150..2672171 (22 bp)
GCACCGAACCTATATAAAAATCCAT
NONE
Os.27691.2.S1_at--783--33534Chr12:2672150..2672172 (23 bp)
CACCGAACCTATATAAAAATCCATG
NONE
Target Sequence
TCTGGGCGTGGCACCGAACCTATATAAAAATCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27691.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis