Browse Element(s) Details


Os.27691.2.S1_x_at

Description gb:NM_195032.1
DB_XREF= gi:37531423
TID=Os.27691.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27691 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNAb0015J03.10), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0856011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g048105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g059003/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g476903/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g257103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g144703/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g033403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g170603/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g231403/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g259103/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g465702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g183502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g179902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g077902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g437802/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g193102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g326582/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g163902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g036902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g121902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g407602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g071202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g279502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g285102/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g225302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g061602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g301792/11Cytochrome P450 family protein, expressed
LOC_Os08g399202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g420801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g374301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g089001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g304941/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g034201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g274101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g520101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g049501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g323501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g049301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g631301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g144601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g038401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g128501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g174501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g299901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g142401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g010301/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g363601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g517401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g733441/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g128741/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g010201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g230501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g205801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g173601/11retrotransposon protein, putative, unclassified
LOC_Os08g203701/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g290901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g094901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g220801/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g231101/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g168701/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g08540Os.23185.1.S1_at10/1110+4395411..4402922Cytochrome P450 family protein, expressed
LOC_Os10g08550Os.2232.1.S1_a_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.2232.3.S1_x_at11/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08550Os.57462.1.S1_x_at4/1110+4405766..4410384Enolase, putative, expressed
LOC_Os10g08560Os.27691.2.S1_x_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08560Os.27691.2.S1_at11/1110+4419535..4420535retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g08570OsAffx.18174.1.S1_at10/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08570Os.10084.3.S1_at1/1110+4421729..4427909RNA recognition motif family protein, expressed
LOC_Os10g08580Os.46278.1.S1_a_at11/1110+4429249..4433064Deoxyribodipyrimidine photo-lyase, putative, expressed
LOC_Os10g08590OsAffx.8457.1.S1_at11/1110+4434863..4436227hypothetical protein
LOC_Os10g08599NANA10+4437906..4438695NA
LOC_Os10g08610OsAffx.20714.2.S1_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_s_at11/1110+4441023..4444375hypothetical protein
LOC_Os10g08610OsAffx.20714.1.S1_at10/1110+4441023..4444375hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27691.2.S1_x_at--525--15724Chr11:3964458..3964481 (24 bp)
AGCTAATATGGTGGTTGAGGCATCT
LOC_Os11g07790
Os.27691.2.S1_x_at--706--83724Chr12:2050539..2050563 (25 bp)
GGCGTACCGATTTCACCCTCGTCGA
LOC_Os12g04810
Os.27691.2.S1_x_at--639--4194Chr12:10594138..10594162 (25 bp)
CCCTCGTCGAGCCAGTGGTGATGAT
LOC_Os12g18350
Os.27691.2.S1_x_at--849--7755Chr12:2050570..2050594 (25 bp)
GGTGATGATGTCAGTACCTTCCGTC
LOC_Os12g04810
Os.27691.2.S1_x_at--327--6276Chr12:2050576..2050600 (25 bp)
GATGTCAGTACCTTCCGTCCGACAG
LOC_Os12g04810
Os.27691.2.S1_x_at--881--9942Chr12:17220325..17220348 (24 bp)
AGGATTGGATAGGATGCACTCGGAC
LOC_Os12g29090
Os.27691.2.S1_x_at--350--5212Chr10:4420401..4420425 (25 bp)
GAATTTCTGGGCGTGGCACCGAACC
LOC_Os10g08560
Os.27691.2.S1_x_at--811--7571Chr10:4420409..4420433 (25 bp)
GGGCGTGGCACCGAACCTATATAAA
LOC_Os10g08560
Os.27691.2.S1_x_at--66--4671Chr10:4420411..4420435 (25 bp)
GCGTGGCACCGAACCTATATAAAAA
LOC_Os10g08560
Os.27691.2.S1_x_at--603--79337Chr12:2672150..2672170 (21 bp)
GGCACCGAACCTATATAAAAATCCA
NONE
Os.27691.2.S1_x_at--835--103767Chr12:4356390..4356414 (25 bp)
TTTTACCTCAATCTCGCATATATCC
NONE
Target Sequence 
AGCTAATATGGTGGTTGAGGCATCTGGAGGCACAGCAGATCACGCCTGTCAGGAGGCAGCATACCTGATGATGGCCAGAC
TACGGGAGCGCCACAACTACATCTTCCACGACACGGCGTACCGATTTCACCCTCGTCGAGCCAGTGGTGATGATGTCAGT
ACCTTCCGTCCGACAGCCGGCGAGAACGACACCACCTTTGGTCACATGTGTGCTGTGATGAGAGGATTGGATAGGATGCA
CTCGGACCTGCACAAGGCGACCAAGGCCTTGAATGATGGGAAGCTCATGAGGATCGTCGCTCTGAAGGACGAGATAGCGC
GCCTGAAGAGGGAGAATGCTCAGTTAAAGGGTCTTCCCGCGCCAGGAGGAGACGTGGATCTGAATGTCAACATTGTCGTC
TGTGTACCCCGGCCGGTCCTGGACGGGGATTTTAATGCACATTCTGCTTGGAATTCTATTCGGGAATTTCTGGGCGTGGC
ACCGAACCTATATAAAAATCCATGTCTCCATCTCTTTTACCTCAATCTCGCATATATCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27691.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis