Browse Element(s) Details


Os.27738.1.S1_at

Description gb:AK069726.1
DB_XREF= gi:32979750
TID=Os.27738.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27738 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030M13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030M13, full insert sequence.
FL= gb:AK069726.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0562011/11CIPK-like protein 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05590OsAffx.16100.1.S1_at11/117+2621590..2623289hypothetical protein
LOC_Os07g05600NANA7+2626653..2631386retrotransposon protein, putative, unclassified
LOC_Os07g05610Os.9372.1.S1_at11/117+2632631..2638789expressed protein
LOC_Os07g05620Os.27738.1.S1_at11/117+2641852..2646073CIPK-like protein 1, putative, expressed
LOC_Os07g05620Os.51613.1.S1_x_at1/117+2641852..2646073CIPK-like protein 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27738.1.S1_at--861--2811Chr07:2642705..2642729 (25 bp)
AAGATTTGCATCAAGGCTGCCTGCA
LOC_Os07g05620
Os.27738.1.S1_at--515--8331Chr07:2642691..2642715 (25 bp)
GGCTGCCTGCAAACGAGATATTGTC
LOC_Os07g05620
Os.27738.1.S1_at--718--1591Chr07:2642654..2642678 (25 bp)
AGCTGCTGGACCCATGGGCTTTAAT
LOC_Os07g05620
Os.27738.1.S1_at--948--1011Chr07:2642346..2642370 (25 bp)
AGGTTTTTGAAGTCACGCCCTCGCT
LOC_Os07g05620
Os.27738.1.S1_at--222--7031Chr07:2642321..2642345 (25 bp)
GTACATGGTTGAGCTCCGCAAATCT
LOC_Os07g05620
Os.27738.1.S1_at--835--9771Chr07:2642297..2642321 (25 bp)
TAACGGCGACACTCTTGAATTCCAT
LOC_Os07g05620
Os.27738.1.S1_at--13--5431Chr07:2642132..2642156 (25 bp)
GAAGCCGGAGAGTAGCATAATCGCA
LOC_Os07g05620
Os.27738.1.S1_at--1053--3031Chr07:2642114..2642138 (25 bp)
AATCGCAGGCGATGAGATCCAGCAT
LOC_Os07g05620
Os.27738.1.S1_at--1075--1011Chr07:2642086..2642110 (25 bp)
AGGTCACCGTGATTGGCAGTTTGGC
LOC_Os07g05620
Os.27738.1.S1_at--691--5271Chr07:2641891..2641915 (25 bp)
GAATGTGCATAGTTTTGCTTCCTTG
LOC_Os07g05620
Os.27738.1.S1_at--1139--1491Chr07:2641854..2641878 (25 bp)
AGCAGTAACCTGTGAAATCCGATGA
LOC_Os07g05620
Target Sequence 
AAGATTTGCATCAAGGCTGCCTGCAAACGAGATATTGTCGAAAATTGAAGCAGCTGCTGGACCCATGGGCTTTAATGTAC
AGAAGCGCAACNACAAGCTGAAGTTGCAAGGAGAGAATCCAGGAAGGAAAGGTCAGCTTGCAATTGCAACAGAGGTTTTT
GAAGTCACGCCCTCGCTGTACATGGTTGAGCTCCGCAAATCTAACGGCGACACTCTTGAATTCCATAAGTTNTACCACAA
CATCTCCAATGGCCTGAAAGATGTGATGTGGAAGCCGGAGAGTAGCATAATCGCAGGCGATGAGATCCAGCATCGGAGGT
CACCGTGATTGGCAGTTTGGCACCAAAAGTTCAGTGATAGTATAAAGTAGATAACCAGCCAGGAAAACCTACTAAGGAAT
GGCCTGTGGCTGTTTTTTTTTTTTTTGGTTCTTTTTACCTTTTAAGTTGAGTTACTATCTAATCTAGACATGGTTGTAAA
CAAAGTTTGTATGGAGATGGAATGTGAATGAAGAATGTGCATAGTTTTGCTTCCTTGNCTTATTTTAAAAGCAGTAACCT
GTGAAATCCGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis