Browse Element(s) Details


Os.27990.1.S1_at

Description gb:AK062751.1
DB_XREF= gi:32972769
TID=Os.27990.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27990 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-G03, full insert sequence.
FL= gb:AK062751.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0163010/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01580OsAffx.21060.1.S1_at11/117+362611..363127expressed protein
LOC_Os07g01590NANA7+365815..367129hypothetical protein
LOC_Os07g01600Os.14539.1.S1_at11/117+372110..373981Dirigent-like protein, expressed
LOC_Os07g01610NANA7+374522..376615retrotransposon protein, putative, unclassified
LOC_Os07g01620Os.16630.1.S1_at11/117+381818..382537Dirigent-like protein, expressed
LOC_Os07g01630Os.27990.1.S1_at10/117+382650..383470Dirigent-like protein, expressed
LOC_Os07g01640NANA7+386259..389308retrotransposon protein, putative, unclassified
LOC_Os07g01650NANA7+389938..395275transposon protein, putative, unclassified
LOC_Os07g01660Os.7499.1.S1_at11/117+402852..403921Dirigent-like protein, expressed
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27990.1.S1_at--723--5631Chr07:382898..382922 (25 bp)
GACACGGTGATCATCGACGACGTGG
LOC_Os07g01630
Os.27990.1.S1_at--491--8111NONE
GGACGTACATGCTTCGTCCATGGCG
NONE
Os.27990.1.S1_at--460--511Chr07:383009..383033 (25 bp)
ATCGTCGACATCACGGTGGTACTCA
LOC_Os07g01630
Os.27990.1.S1_at--663--8591Chr07:383025..383049 (25 bp)
TGGTACTCACCGACGGGCCATACAA
LOC_Os07g01630
Os.27990.1.S1_at--303--8031Chr07:383176..383200 (25 bp)
GGAGTCCAAGCTGCACGCCGTGCTG
LOC_Os07g01630
Os.27990.1.S1_at--855--4731Chr07:383234..383258 (25 bp)
GCTGTTGCTCCTAGTGGTAGTGGTA
LOC_Os07g01630
Os.27990.1.S1_at--349--9991Chr07:383257..383281 (25 bp)
TAGCCATGGCCACCCATTTTTGGTG
LOC_Os07g01630
Os.27990.1.S1_at--643--171Chr07:383272..383296 (25 bp)
ATTTTTGGTGACCTCTGCCTCAGAG
LOC_Os07g01630
Os.27990.1.S1_at--845--1371Chr07:383298..383322 (25 bp)
AGACCACTCACAAACTACCAGTTAG
LOC_Os07g01630
Os.27990.1.S1_at--212--7751Chr07:383322..383346 (25 bp)
GGTGTGCAATTATCCTTTTGTCCTT
LOC_Os07g01630
Os.27990.1.S1_at--1020--9591Chr07:383416..383440 (25 bp)
TCATATATATACTGTGCCACCACGA
LOC_Os07g01630
Target Sequence 
GACACGGTGATCATCGACGACGTGGTGACGGAGGGCCCAAGCCTGGCGTCCAGGGAGGTTGGGCGGGCGCAGGGGACGTA
CATGCTTCGTCCATGGCGAGGCCGGTGTTCATCGTCGACATCACGGTGGTACTCACCGACGGGCCATACAACGGGAGCAC
CATCCTCATCGCCGGCCGCGACGACACCTCCGAGGAGGTCAGGGAGCTGGCGGTGGTCGGCGGCAGCGGGATGCTCCGGC
GAGCGTCCGGCACGTGCTGTGGAGGACGGCCAAGGTGGAGTCCAAGCTGCACGCCGTGCTGGAGCTCGACGTGCACGCCT
CGGTGCCTGCTGCTGCTGTTGCTCCTAGTGGTAGTGGTAGCCATGGCCACCCATTTTTGGTGACCTCTGCCTCAGAGTAG
ACCACTCACAAACTACCAGTTAGGTGTGCAATTATCCTTTTGTCCTTTTTTTTTCTGAAATTATCTGCAATATCTTTTTT
TCTGGACAATGAATTGCACACAATAATCAACATCGTTCATATATATACTGTGCCACCACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27990.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis