Browse Element(s) Details


Os.30909.1.S1_at

Description gb:AK108138.1
DB_XREF= gi:32993347
TID=Os.30909.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30909 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-139-E05, full insert sequence.
FL= gb:AK108138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0919011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09140OsAffx.1965.1.S1_at11/111+4587722..4588174hypothetical protein
LOC_Os01g09150OsAffx.10980.1.S1_at11/111+4592862..4593614hypothetical protein
LOC_Os01g09160NANA1+4596579..4599829transposon protein, putative, unclassified
LOC_Os01g09170NANA1+4600649..4606804transposon protein, putative, unclassified
LOC_Os01g09180NANA1+4607869..4608850transposon protein, putative, unclassified
LOC_Os01g09190Os.30909.1.S1_at11/111+4611693..4612627expressed protein
LOC_Os01g09200Os.19128.1.S1_at11/111+4618480..4628164Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30909.1.S1_at--105--1871Chr01:4612045..4612069 (25 bp)
ACGAGCTGATCAGGCGCCTGTCCAA
LOC_Os01g09190
Os.30909.1.S1_at--91--8711Chr01:4612063..4612087 (25 bp)
TGTCCAAGAGCGTCCAGCCCGTGTG
LOC_Os01g09190
Os.30909.1.S1_at--1050--771Chr01:4612323..4612347 (25 bp)
ATGTGGCCGGTGCTCGTCTCTTCTT
LOC_Os01g09190
Os.30909.1.S1_at--825--4111Chr01:4612371..4612395 (25 bp)
CGCTCTACCTGACGCCGGCGTGAAA
LOC_Os01g09190
Os.30909.1.S1_at--681--7511Chr01:4612407..4612431 (25 bp)
GTGGATGAGCCCAGCAACTGATCGT
LOC_Os01g09190
Os.30909.1.S1_at--570--4551Chr01:4612415..4612439 (25 bp)
GCCCAGCAACTGATCGTACAATCGT
LOC_Os01g09190
Os.30909.1.S1_at--612--9831Chr01:4612431..4612455 (25 bp)
TACAATCGTAATCGATCGAGGCCGC
LOC_Os01g09190
Os.30909.1.S1_at--323--4331Chr01:4612462..4612486 (25 bp)
CCATGTCTAGCTAGCAACAGTGCCA
LOC_Os01g09190
Os.30909.1.S1_at--507--2491Chr01:4612477..4612501 (25 bp)
AACAGTGCCAAGAACGAGATACCGG
LOC_Os01g09190
Os.30909.1.S1_at--668--7071Chr01:4612538..4612562 (25 bp)
GTAATCAGCCTAATAACACACTCAT
LOC_Os01g09190
Os.30909.1.S1_at--968--9712Chr07:11141926..11141949 (24 bp)
TAATACTTAATCCACTCATCTCTCA
NONE
Target Sequence 
ACGAGCTGATCAGGCGCCTGTCCAAGAGCGTCCAGCCCGTGTGCCTCTTCTGCGCGGCGGCGTCGCTCACCATGTCCGTC
AACCTGCCGGCGAGCGGCGGGGCCGGCGGCGCGCTCTACGGCGCGACGCTGGCGTTCGTCTGCCTGGGCCTGTTCGCCAG
CCTCGGCCTGTCCATGTACACCATCGTGTCCAGGCCCGGCGACGCCGCGGTGGCGAGGGTGCAGAAGTGGGCGATGGTGC
TCGCCCTGGCGTTCGTGCTCGTCTCCTTCACGCTCCGCATGTGGCCGGTGCTCGTCTCTTCTTCCTCCTCGCCGGCGCCG
CCGCCGCGCTCTACCTGACGCCGGCGTGAAAGCTGGTCGGCGGTGGATGAGCCCAGCAACTGATCGTACAATCGTAATCG
ATCGAGGCCGCCGGCGACCATGTCTAGCTAGCAACAGTGCCAAGAACGAGATACCGGCAGGAAATGGAAGTGCCAAAAAT
TAAAGTATTATTTGTAATCAGCCTAATAACACACTCATACACTAGTTAATTGTAGATATATAATGCAACATTAATACTTA
ATCCACTCATCTCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30909.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis