Browse Element(s) Details


Os.3114.1.S1_at

Description gb:AK066524.1
DB_XREF= gi:32976542
TID=Os.3114.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3114 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative extensin (OSJNBa0093B11.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074I04, full insert sequence.
FL= gb:AK066524.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3397010/11Double-stranded RNA binding motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33952NANA10+17748315..17748492NA
LOC_Os10g33954NANA10+17751297..17751602hypothetical protein
LOC_Os10g33960Os.46312.1.S1_a_at11/1110+17756147..17763107rolled leaf1, putative, expressed
LOC_Os10g33960Os.39943.1.S1_s_at1/1110+17756147..17763107rolled leaf1, putative, expressed
LOC_Os10g33970Os.3114.1.S1_at10/1110+17773282..17779372Double-stranded RNA binding motif family protein, expressed
LOC_Os10g33980NANA10+17791154..17791675Pyruvate decarboxylase isozyme 3, putative
LOC_Os10g33990NANA10+17800160..17800743expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0003725molecular_functiondouble-stranded RNA binding
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3114.1.S1_at--899--411Chr10:17773814..17773838 (25 bp)
ATCATCTCCCGGTGGATGCTGAAGA
LOC_Os10g33970
Os.3114.1.S1_at--319--951Chr10:17773784..17773808 (25 bp)
AGGACATCATCAGGCATCTCGAGCT
LOC_Os10g33970
Os.3114.1.S1_at--455--7571Chr10:17773726..17773750 (25 bp)
GGGCGTCATCTTCTGTCAGATTTTG
LOC_Os10g33970
Os.3114.1.S1_at--451--6551Chr10:17773708..17773732 (25 bp)
GATTTTGTAATTAGCTGCCTCCTCC
LOC_Os10g33970
Os.3114.1.S1_at--497--10131Chr10:17773683..17773707 (25 bp)
TATGCACATCCCTTTTCTGTTTTAG
LOC_Os10g33970
Os.3114.1.S1_at--403--831Chr10:17773507..17773531 (25 bp)
ATGGTTGGTTATACTTCCCTGGATA
LOC_Os10g33970
Os.3114.1.S1_at--456--8571Chr10:17773445..17773469 (25 bp)
TGGATATTGTTGTTGCCTCTAGGGA
LOC_Os10g33970
Os.3114.1.S1_at--666--2251Chr10:17773388..17773412 (25 bp)
AAATTTCTCCTAGTCATTCTCCTAA
LOC_Os10g33970
Os.3114.1.S1_at--170--3591Chr10:17773374..17773398 (25 bp)
CATTCTCCTAATCCTCTTATTACTA
LOC_Os10g33970
Os.3114.1.S1_at--1026--10411Chr10:17773349..17773373 (25 bp)
TTATACTCCTGCTTTGCCATGCTGA
LOC_Os10g33970
Os.3114.1.S1_at--625--1011NONE
AGGTAACTATCTTTTCTCACTAATT
NONE
Target Sequence 
ATCATCTCCCGGTGGATGCTGAAGAAGTGGAGGACATCATCAGGCATCTCGAGCTCAAATAATTTCAGAAAGCGTCAACG
AACGAATGGGGCGTCATCTTCTGTCAGATTTTGTAATTAGCTGCCTCCTCCTATGCACATCCCTTTTCTGTTTTAGTTTT
GTTTGCCTTTGGTTCGGATTAGGGGCGCTGGGCAAGCTGCATTTCTCGTAGGGGACACCTAGCTTTTTTTTTTTTGTTCA
GAAGAGAGGGNAAAAAAATGGACAAGACATACATGCAGTGGTAGGCGGTTTGCCCGTTGTTTGGAGATGGATGGTTGGTT
ATACTTCCCTGGATATGCAGTTGGTGGTCTGCTTTTACCCCCAATGATGAGGTGGATATTGTTGTTGCCTCTAGGGAAGG
AAATTATGTGGCGGCAGTTTTNCCTCCTAAAATTTCTCCTAGTCATTCTCCTAATCCTCTTATTACTATTATACTCCTGC
TTTGCCATGCTGATGTTTAGAAGTTGGTGATAGTAGAGCTGTAGAGGTAACTATCTTTTCTCACTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis