Browse Element(s) Details


Os.32770.2.S1_x_at

Description gb:NM_188245.1
DB_XREF= gi:34903573
GEN=P0498B01.27
TID=Os.32770.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32770 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0498B01.27 (P0498B01.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0498B01.27 (P0498B01.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0999011/11Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g099303/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09960Os.41695.5.S1_x_at8/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.3.S1_x_at6/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.2.S1_x_at5/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09960Os.41695.4.S1_x_at1/111+5173048..5180416SWIM zinc finger family protein
LOC_Os01g09970NANA1+5187729..5188217hypothetical protein
LOC_Os01g09980OsAffx.1975.1.S1_at11/111+5192520..5193754hypothetical protein
LOC_Os01g09990Os.32770.1.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.1.S1_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990Os.32770.2.S1_x_at11/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.3.S1_x_at5/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g09990OsAffx.23176.1.S1_x_at2/111+5198664..5200798Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g10000NANA1+5207270..5210094hypothetical protein
LOC_Os01g10010OsAffx.23179.1.S1_at3/111+5212648..5213424PRA1 family protein
LOC_Os01g10020Os.4196.1.S1_at11/111+5215375..5217196Type I phosphodiesterase/nucleotide pyrophosphatase family protein, expressed
LOC_Os01g10030Os.53374.1.S1_at11/111+5223846..5226768expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.32770.2.S1_x_at--34--4291Chr01:5199971..5200132 (25 bp)
CCTCCCGGCTCTAAGAAAGACAAGA
LOC_Os01g09990
Os.32770.2.S1_x_at--376--3231Chr01:5200128..5200152 (25 bp)
CAAGACATCGATACTGATCAGAGCA
LOC_Os01g09990
Os.32770.2.S1_x_at--213--1351Chr01:5200155..5200179 (25 bp)
AGAGTACGTAAAATCTCTCGAGTCA
LOC_Os01g09990
Os.32770.2.S1_x_at--850--9491Chr01:5200170..5200194 (25 bp)
TCTCGAGTCAAAGCTGTCAGAGCTG
LOC_Os01g09990
Os.32770.2.S1_x_at--281--5991Chr01:5200303..5200327 (25 bp)
GAGACGAAGCGAAAGGACCTAGTAG
LOC_Os01g09990
Os.32770.2.S1_x_at--1156--8031Chr01:5200390..5200414 (25 bp)
GGAGATCAAGAGACCTGCACGCTCA
LOC_Os01g09990
Os.32770.2.S1_x_at--141--2791Chr01:5200397..5200421 (25 bp)
AAGAGACCTGCACGCTCAACGTAGA
LOC_Os01g09990
Os.32770.2.S1_x_at--1148--3731Chr01:5200411..5200435 (25 bp)
CTCAACGTAGACTTGCGCGGCGGCG
LOC_Os01g09990
Os.32770.2.S1_x_at--1056--1492Chr01:5200453..5200477 (25 bp)
AGCACGACGGACGTTGTGCTCCGGA
LOC_Os01g09990
Os.32770.2.S1_x_at--1035--9272Chr01:5200472..5200496 (25 bp)
TCCGGACGCTGCAGTGCCTGAGAGA
LOC_Os01g09990
Os.32770.2.S1_x_at--341--1692Chr01:5200516..5200540 (25 bp)
AGCCTCGTGGCGATGAGCACCAGCG
LOC_Os01g09990
Target Sequence
CCTCCCGGCTCTAAGAAAGACAAGACATCGATACTGATCAGAGCAAGAGAGTACGTAAAATCTCTCGAGTCAAAGCTGTC
AGAGCTGGAGGAGAAGAACCGGGAGCTAGAGGCGAGGCTAGCCAGCCGCCCCGCCGCCGCCGCCAAGAACGACAAAGGCG
AGACGGCGGCGGCGCCAGCGCCGGAAGCCGGCGATGAGACGAAGCGAAAGGACCTAGTAGAGATCGAGGTGACGACGAGC
GGCGGCGGCGCCGGAGCGGCGGATGCGGCGGCGGCGGCGGGAGGAGATCAAGAGACCTGCACGCTCAACGTAGACTTGCG
CGGCGGCGGAGGCGGCGGAGGCATGAGCACGACGGACGTTGTGCTCCGGACGCTGCAGTGCCTGAGAGAGCAGATCGGCG
ACGGCGCCAGCCTCGTGGCGATGAGCACCAGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32770.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis