Browse Element(s) Details


Os.33267.1.S1_at

Description gb:AK063631.1
DB_XREF= gi:32973649
TID=Os.33267.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33267 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0077B15.28 (OSJNBa0077B15.28), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-F09, full insert sequence.
FL= gb:AK101150.1 gb:AK063631.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0529011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05250OsAffx.16095.1.S1_at11/117+2365927..2366456hypothetical protein
LOC_Os07g05260Os.44486.1.S1_at11/117+2367490..2368947expressed protein
LOC_Os07g05270OsAffx.16096.1.S1_s_at11/117+2375734..2376125hypothetical protein
LOC_Os07g05270OsAffx.16096.1.S1_at7/117+2375734..2376125hypothetical protein
LOC_Os07g05280NANA7+2380861..2384823retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g05290Os.33267.1.S1_at11/117+2388007..2389172expressed protein
LOC_Os07g05300OsAffx.28284.1.S1_at11/117+2409271..2410643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33267.1.S1_at--403--8571Chr07:2388841..2388865 (25 bp)
TGGTATCAAGCCCTTGGCAACTTCC
LOC_Os07g05290
Os.33267.1.S1_at--149--11Chr07:2388864..2388888 (25 bp)
CCTTGGGTTCAACACTTCAGTTTAT
LOC_Os07g05290
Os.33267.1.S1_at--807--6811Chr07:2388883..2388907 (25 bp)
GTTTATTTATTCTATCGCTACCACT
LOC_Os07g05290
Os.33267.1.S1_at--249--4851Chr07:2388899..2388923 (25 bp)
GCTACCACTACACCTAAGCTAAGGA
LOC_Os07g05290
Os.33267.1.S1_at--991--2511Chr07:2388930..2388954 (25 bp)
AACTTAGTACTCTGATTGTCACTCT
LOC_Os07g05290
Os.33267.1.S1_at--751--1171Chr07:2388979..2389003 (25 bp)
AGTACTGAACACTCAATTGCATGTA
LOC_Os07g05290
Os.33267.1.S1_at--563--9891Chr07:2389012..2389036 (25 bp)
TACTTAGTACTCTGATTGTCACTCT
LOC_Os07g05290
Os.33267.1.S1_at--1144--10131Chr07:2389050..2389074 (25 bp)
TATGCCACCAAAGTACTGCACACGT
LOC_Os07g05290
Os.33267.1.S1_at--781--5111Chr07:2389067..2389091 (25 bp)
GCACACGTACTCTCAATGGCATGTA
LOC_Os07g05290
Os.33267.1.S1_at--15--6991Chr07:2389114..2389138 (25 bp)
GTACGAATGTTATCCATGTGGCCTT
LOC_Os07g05290
Os.33267.1.S1_at--805--791Chr07:2389129..2389153 (25 bp)
ATGTGGCCTTGAGCAGAAACATCTT
LOC_Os07g05290
Target Sequence 
TGGTATCAAGCCCTTGGCAACTTCCTTGGGTTCAACACTTCAGTTTATTTATTCTATCGCTACCACTACACCTAAGCTAA
GGAGGAGCAAACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATACCACCTAAGTACTGAACACTCAATTGCAT
GTATGAGTACGTACTTAGTACTCTGATTGTCACTCTATTTATGTATCCATATGCCACCAAAGTACTGCACACGTACTCTC
AATGGCATGTATGAGTAATGTTTGCATGTATGAGTACGAATGTTATCCATGTGGCCTTGAGCAGAAACATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33267.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis