Browse Element(s) Details


Os.36874.1.S1_at

Description gb:AK062466.1
DB_XREF= gi:32972484
TID=Os.36874.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.36874 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-103-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-103-E02, full insert sequence.
FL= gb:AK062466.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4245010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g42440Os.25599.1.A1_at10/118+26659995..26664271CCT motif family protein, expressed
LOC_Os08g42450Os.36874.1.S1_at10/118+26687239..26689248expressed protein
LOC_Os08g42460NANA8+26696917..26697682hypothetical protein
LOC_Os08g42470Os.14318.1.S1_at10/118+26708223..26710424bHLH transcription factor GBOF-1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36874.1.S1_at--1071--1051Chr08:26687748..26687772 (25 bp)
AGGGTATCCTCAATCCGGGCCATAT
LOC_Os08g42450
Os.36874.1.S1_at--996--1751Chr08:26687781..26687805 (25 bp)
ACCTCCATCAGGTGCTGTGTACCCT
LOC_Os08g42450
Os.36874.1.S1_at--1101--6771Chr08:26687813..26687837 (25 bp)
GTTACCCTAGCTCCCATGGTGTGTA
LOC_Os08g42450
Os.36874.1.S1_at--390--811Chr08:26687828..26687852 (25 bp)
ATGGTGTGTACCCTCCACCACAGGG
LOC_Os08g42450
Os.36874.1.S1_at--52--7591Chr08:26687895..26687919 (25 bp)
GGGCTACTTCAATCAGGGCCAGCAA
LOC_Os08g42450
Os.36874.1.S1_at--634--9711Chr08:26687903..26687927 (25 bp)
TCAATCAGGGCCAGCAACCTTACTA
LOC_Os08g42450
Os.36874.1.S1_at--981--7671Chr08:26687979..26688003 (25 bp)
GGGTTCTGGAGCTGGGTTTCTCAAA
LOC_Os08g42450
Os.36874.1.S1_at--890--3731NONE
CTCAAAGGATGTTTGGCCGCTCTTT
NONE
Os.36874.1.S1_at--863--1471Chr08:26689091..26689115 (25 bp)
AGAATTATTTTGCTCTGTGCAGCAG
LOC_Os08g42450
Os.36874.1.S1_at--242--6211Chr08:26689129..26689153 (25 bp)
GAGGCTATTGTTTCTAGCATTTGTG
LOC_Os08g42450
Os.36874.1.S1_at--148--5151Chr08:26689195..26689219 (25 bp)
GCAAAATATTTGTTACTCTCAGGAA
LOC_Os08g42450
Target Sequence 
AGGGTATCCTCAATCCGGGCCATATCCATACCCACCTCCATCAGGTGCTGTGTACCCTCCTCAGGGTTACCCTAGCTCCC
ATGGTGTGTACCCTCCACCACAGGGGCCTTACCCCCCACCTCACCAGCCTCCACCACCAGGGTACCAGGGCTACTTCAAT
CAGGGCCAGCAACCTTACTACCCGCCGCCACCACTGCCATATGACCACTGCCACCACCACTGTGGTGATGAGGGTTCTGG
AGCTGGGTTTCTCAAAGGATGTTTGGCCGCTCTTTGCTGCTGTTGCCTGCTGNAGGAGTNCTGCTTCTAANGAGAAGAAT
TATTTTGCTCTGTGCAGCAGTAGTATGTGATAAGAGGCTATTGTTTCTAGCATTTGTGTAAACATCAGTATATTTGATTG
TTTTTTTTTCCAGAAATCCGCAAAATATTTGTTACTCTCAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis