Browse Element(s) Details


Os.37895.1.S1_x_at

Description gb:AK104463.1
DB_XREF= gi:32989672
TID=Os.37895.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.37895 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative vesicle transport v-SNARE protein (P0510F09.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-301-C03, full insert sequence.
FL= gb:AK104463.1 gb:AK059962.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g511209/11Vesicle transport v-SNARE 13, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51080NANA1+29672292..29675071retrotransposon protein, putative, unclassified
LOC_Os01g51090NANA1+29675556..29678446retrotransposon protein, putative, unclassified
LOC_Os01g51100NANA1+29679530..29682362retrotransposon protein, putative, unclassified
LOC_Os01g51110OsAffx.21556.1.S1_at3/111+29684385..29684902hypothetical protein
LOC_Os01g51120Os.7165.1.S1_at11/111+29691374..29694876Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g51120Os.37895.1.S1_x_at9/111+29691374..29694876Vesicle transport v-SNARE 13, putative, expressed
LOC_Os01g51130OsAffx.13097.1.S1_s_at11/111+29696595..29702970transposon protein, putative, Mutator sub-class
LOC_Os01g51140Os.25546.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g51140Os.32078.1.S1_at11/111+29709555..29712493Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006891biological_processintra-Golgi vesicle-mediated transport
GO:0006896biological_processGolgi to vacuole transport
GO:0006944biological_processmembrane fusion
GO:0009630biological_processgravitropism
GO:0046907biological_processintracellular transport
GO:0005770cellular_componentlate endosome
GO:0005802cellular_componentGolgi trans face
GO:0005886cellular_componentplasma membrane
GO:0030140cellular_componenttrans-Golgi network transport vesicle
GO:0000149molecular_functionSNARE binding
GO:0004872molecular_functionreceptor activity
GO:0005483molecular_functionsoluble NSF attachment protein activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37895.1.S1_x_at--728--5891Chr01:29692302..29692326 (25 bp)
GAGCTCCTTGAGTCAGGCTTGGCTG
LOC_Os01g51120
Os.37895.1.S1_x_at--361--9511NONE
TCTCGCGGCGTCTACTGATCAGAGG
NONE
Os.37895.1.S1_x_at--875--7731Chr01:29693636..29693660 (25 bp)
GGTGTGTCAATTCTTCAGGATCTTC
LOC_Os01g51120
Os.37895.1.S1_x_at--1087--9551Chr01:29693656..29693680 (25 bp)
TCTTCATCAACAACGGCAGTCACTG
LOC_Os01g51120
Os.37895.1.S1_x_at--845--5091NONE
GCACGCTCATACTACTTTGCATGGG
NONE
Os.37895.1.S1_x_at--273--3171Chr01:29694453..29694477 (25 bp)
AATTGCAGCTCTTGTTCTAGCCATC
LOC_Os01g51120
Os.37895.1.S1_x_at--630--4331Chr01:29694473..29694497 (25 bp)
CCATCCTTCTCATACTGTACTTTAA
LOC_Os01g51120
Os.37895.1.S1_x_at--848--31Chr01:29694506..29694530 (25 bp)
ATTGAGCTTGCTTTCTGGTAGGGTC
LOC_Os01g51120
Os.37895.1.S1_x_at--725--7691Chr01:29694526..29694550 (25 bp)
GGGTCTTCAAAGCAATTTCCGCTCA
LOC_Os01g51120
Os.37895.1.S1_x_at--122--831Chr01:29694636..29694660 (25 bp)
ATGGTATTTGTGTGGCTCATCGCCC
LOC_Os01g51120
Os.37895.1.S1_x_at--1043--7011Chr01:29694673..29694697 (25 bp)
GTACAGTTAACGTGCACTCCAATAT
LOC_Os01g51120
Target Sequence 
GAGCTCCTTGAGTCAGGCTTGGCTGACACTCTCGCGGCGTCTACTGATCAGAGGGGAAGATTGATGATGACAACAGAAAG
ACTGAATCAGTCCAATGATAAGATTAAAGAGAGCCGAAGAACCATATTGGAGACAGAAGAACTTGGTGTGTCAATTCTTC
AGGATCTTCATCAACAACGGCAGTCACTGCTGCACGCTCATACTACTTTGCATGGGGTTGATGATAATGTTGGCAAGAGT
AAAAAGATCCTGGCGGCAATGTCAAAGAGGATGGACAGGAACAAGTGGATCATTGGGGGGATAATTGCAGCTCTTGTTCT
AGCCATCCTTCTCATACTGTACTTTAAGCTCGCTTATTGAGCTTGCTTTCTGGTAGGGTCTTCAAAGCAATTTCCGCTCA
GTAAATGTGTGATAAAATAGTTGCCTGAATGTTGTACATTGGGCAACACATATCTCTGCAAGCACACACTTGTTTCCCCA
AACTTATGGTATTTGTGTGGCTCATCGCCCATGTCATGTAATGTACAGTTAACGTGCACTCCAATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37895.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis