Browse Element(s) Details


Os.38098.1.S1_at

Description gb:AK060277.1
DB_XREF= gi:32970295
TID=Os.38098.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.38098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-005-H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-H07, full insert sequence.
FL= gb:AK060277.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g340702/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g34010Os.17874.1.S1_at11/119+20077712..20082152Translation initiation factor IF-2, putative, expressed
LOC_Os09g34020NANA9+20082610..20082858expressed protein
LOC_Os09g34030NANA9+20083937..20084414expressed protein
LOC_Os09g34040Os.9589.1.S1_at11/119+20086132..20090090TBC domain containing protein, expressed
LOC_Os09g34050NANA9+20090882..20091714hypothetical protein
LOC_Os09g34060Os.54250.1.S1_at11/119+20093715..20098128Transcription factor RF2a, putative, expressed
LOC_Os09g34070Os.20697.1.S1_at11/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34070Os.38098.1.S1_at2/119+20106823..20114088RNA recognition motif family protein, expressed
LOC_Os09g34080OsAffx.30133.1.S1_at11/119+20115557..20116111hypothetical protein
LOC_Os09g34090OsAffx.17991.1.S1_at10/119+20116966..20121182NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os09g34100Os.14721.1.S1_at11/119+20121867..20126934Hydroxyacylglutathione hydrolase 2, mitochondrial precursor, putative, expressed
LOC_Os09g34110Os.47933.1.S1_at11/119+20127720..20133877expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009911biological_processpositive regulation of flower development
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38098.1.S1_at--917--5571Chr06:23545445..23545469 (25 bp)
GAAATTGTTCTCATCCCAAAGGACG
NONE
Os.38098.1.S1_at--800--1611Chr06:23545412..23545436 (25 bp)
AGCTGGCCTACTTGTTCCCTGGAAA
NONE
Os.38098.1.S1_at--25--8171Chr06:23545392..23545416 (25 bp)
GGAAAACTCACACACATCAGTCATT
NONE
Os.38098.1.S1_at--42--10191Chr06:23545338..23545362 (25 bp)
TATATTCCAGCGCTACTACAGACAG
NONE
Os.38098.1.S1_at--386--5511Chr09:20106878..20106901 (24 bp)
GAAAATTCCCCAACTTGACGGCTTG
LOC_Os09g34070
Os.38098.1.S1_at--525--9771Chr09:20106840..20106864 (25 bp)
TAACCTAAGCGACGACCCATGTTGG
LOC_Os09g34070
Os.38098.1.S1_at--788--10811Chr09:20106808..20106832 (25 bp)
TTGTCGATGCTACCTACCTGATAAG
NONE
Os.38098.1.S1_at--1148--151Chr09:20106767..20106791 (25 bp)
ATTATCGCCATTAATACTCGAGGCT
NONE
Os.38098.1.S1_at--1150--3311Chr09:20106692..20106716 (25 bp)
CACTTGGGCTAGGTGTGTTTCTGCT
NONE
Os.38098.1.S1_at--531--7431Chr09:20106678..20106702 (25 bp)
GTGTTTCTGCTTGAACGACATTGTA
NONE
Os.38098.1.S1_at--286--6631Chr09:20106611..20106635 (25 bp)
GTTGGTCCGGTGTGATGTCATCTGC
NONE
Target Sequence 
GAAATTGTTCTCATCCCAAAGGACGTGGTAGTGAGCTGGCCTACTTGTTCCCTGGAAAACTCACACACATCAGTCATTTC
AGTACATGGAGGACAAACTTGGGGAATTATATTCCAGCGCTACTACAGACAGAATATTTGCTGATCCAAGTACTATAATG
TACAATCACATGATTAAAAATTTGACCATGGTATAGTAAAAAAAAAAAAAAAAAAAGGCCACCCTACTGGAAAATTCCCC
AACTTGACGGCTTGGTCCGCTCTCTCCTAACCTAAGCGACGACCCATGTTGGTGTGAAGTTGTCGATGCTACCTACCTGA
TAAGGACGAATATAAGCCTAATTATCGCCATTAATACTCGAGGCTTATGAAAAAATTCTCCCTCTTTCTTTCTTTTTTGC
CGTTTGAGTTAAGTGCACTTGGGCTAGGTGTGTTTCTGCTTGAACGACATTGTAAGTTTGTAAACCGTTTGTTTTGTTAG
TTTTTCCTACTCGTTCGTTGGTCCGGTGTGATGTCATCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis