Browse Element(s) Details


Os.40687.1.S1_at

Description gb:AK119316.1
DB_XREF= gi:37988939
TID=Os.40687.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.40687 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) fimbrin-like protein (actin binding motif) (B1075D06.4), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-130-H05, full insert sequence.
FL= gb:AK119316.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3308011/11Fimbrin-like protein 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33050Os.2120.1.S1_a_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.2.S1_x_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.1.S1_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33060Os.45981.1.S1_at11/111+18490755..18500776HEAT repeat family protein, expressed
LOC_Os01g33070NANA1+18503381..18504722pentatricopeptide, putative
LOC_Os01g33080Os.40687.1.S1_at11/111+18513831..18520220Fimbrin-like protein 2, putative, expressed
LOC_Os01g33090Os.6115.1.S1_at11/111+18532023..18535067Receptor-like protein kinase, putative, expressed
LOC_Os01g33100OsAffx.19542.3.S1_x_at7/111+18537707..18541929retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0003779molecular_functionactin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40687.1.S1_at--980--6611Chr01:18519118..18519142 (25 bp)
GTTGTGAATTGGAGCCTTGTTACCA
LOC_Os01g33080
Os.40687.1.S1_at--265--4911Chr01:18519495..18519519 (25 bp)
GCTTCATACATCATTTCTGTGGCTA
LOC_Os01g33080
Os.40687.1.S1_at--1027--4851Chr01:18519516..18519540 (25 bp)
GCTAGGAAGCTTGGTTGCTCCATTT
LOC_Os01g33080
Os.40687.1.S1_at--267--4791Chr01:18519532..18519556 (25 bp)
GCTCCATTTTCTTGCTACCAGAAGA
LOC_Os01g33080
Os.40687.1.S1_at--661--2491Chr01:18519817..18519841 (25 bp)
AACATCATTTTCATTGGACACCGAA
LOC_Os01g33080
Os.40687.1.S1_at--375--6751Chr01:18519849..18519873 (25 bp)
GTTCATGCGAAACAAGCTCCATCTC
LOC_Os01g33080
Os.40687.1.S1_at--237--731Chr01:18519882..18519906 (25 bp)
ATGATTCTGCATCCGAGTCATCGTT
LOC_Os01g33080
Os.40687.1.S1_at--843--8151Chr01:18519947..18519971 (25 bp)
GGAAACGATCTGACTGCTTGTTGAA
LOC_Os01g33080
Os.40687.1.S1_at--27--6351Chr01:18519978..18520002 (25 bp)
GATGCTCGTCATCCCATGAAGGGTT
LOC_Os01g33080
Os.40687.1.S1_at--251--8311Chr01:18520003..18520027 (25 bp)
GGCTATGTTCTTGATTCTTTGCTAT
LOC_Os01g33080
Os.40687.1.S1_at--783--7831Chr01:18520160..18520184 (25 bp)
GGTAGCCGATATCTGTAACATCATA
LOC_Os01g33080
Target Sequence 
GTTGTGAATTGGAGCCTTGTTACCAAAGGAGAAAAAGATGAAGAAAAGCAAATGAATGCTTCATACATCATTTCTGTGGC
TAGGAAGCTTGGTTGCTCCATTTTCTTGCTACCAGAAGATATTCTGGAGGTGAACCAGAAAATGATGCTAACCTTGACAG
CAAGCATAATGTACTGGCATTTGAAGAAGCCAACATCATTTTCATTGGACACCGAAAACGGCAGTTCATGCGAAACAAGC
TCCATCTCAACATCAGATGATTCTGCATCCGAGTCATCGTTCGATGATAGTGGAGCTAGATAGATTCGTGAGACCATGAA
AGGAAACGATCTGACTGCTTGTTGAAACGTGGGATGCTCGTCATCCCATGAAGGGTTGGCTATGTTCTTGATTCTTTGCT
ATAATTTGGAGAGCAAATGCATTCAAGATTGGGATGGGAATGGTAAAGAGTTTTGATTGTTTCGTTTTATGGGTTTTTTG
TAGTGTGAAATCGATTTGATGAGAGATGTGTAACATCCTGTAAATATTGACACAGGTAGCCGATATCTGTAACATCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40687.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis