Browse Element(s) Details

Os.41695.3.S1_x_at

Description

gb:NM_194964.1
DB_XREF= gi:37531287
TID=Os.41695.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41695 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative retroelement (OSJNBa0050E08.10), mRNA.
PROD=putative retroelement
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os10g07248	11/11	transposon protein, putative, Mutator sub-class
LOC_Os07g46020	10/11	transposon protein, putative, Mutator sub-class
LOC_Os10g26360	10/11	transposon protein, putative, Mutator sub-class
LOC_Os01g28740	10/11	transposon protein, putative, Mutator sub-class
LOC_Os03g46080	10/11	Transposable element protein, putative, MuDR
LOC_Os07g41430	10/11	transposon protein, putative, Mutator sub-class
LOC_Os08g28990	10/11	transposon protein, putative, Mutator sub-class
LOC_Os11g31830	10/11	Transposable element protein, putative, MuDR
LOC_Os05g25470	10/11	transposon protein, putative, Mutator sub-class
LOC_Os04g12520	10/11	transposon protein, putative, Mutator sub-class
LOC_Os05g36060	9/11	transposon protein, putative, Mutator sub-class
LOC_Os03g24630	9/11	hypothetical protein
LOC_Os10g37560	9/11	expressed protein
LOC_Os07g10470	9/11	Zinc knuckle family protein
LOC_Os11g39230	8/11	hypothetical protein
LOC_Os12g29530	8/11	transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g07784	8/11	transposon protein, putative, Mutator sub-class
LOC_Os05g05090	8/11	Transposable element protein, putative, MuDR
LOC_Os03g02370	8/11	calcineurin-like phosphoesterase family protein, putative
LOC_Os09g29180	7/11	hypothetical protein
LOC_Os08g27000	7/11	Zinc knuckle family protein
LOC_Os05g07920	6/11	transposon protein, putative, Mutator sub-class
LOC_Os04g23470	6/11	transposon protein, putative, Mutator sub-class
LOC_Os01g09960	6/11	SWIM zinc finger family protein
LOC_Os02g03240	5/11	transposon protein, putative, Mutator sub-class
LOC_Os11g14590	5/11	hypothetical protein
LOC_Os10g17710	5/11	calcineurin-like phosphoesterase family protein, putative
LOC_Os03g47130	5/11	transposon protein, putative, Mutator sub-class
LOC_Os02g47480	4/11	hypothetical protein
LOC_Os06g08070	4/11	transposon protein, putative, Mutator sub-class
LOC_Os06g38890	4/11	hypothetical protein
LOC_Os07g47010	4/11	SWIM zinc finger family protein
LOC_Os01g50800	4/11	hypothetical protein
LOC_Os03g18060	3/11	transposon protein, putative, Mutator sub-class, expressed
LOC_Os08g19970	3/11	Transposable element protein, putative, MuDR
LOC_Os01g18470	3/11	transposon protein, putative, Mutator sub-class
LOC_Os04g05460	3/11	hypothetical protein
LOC_Os12g08080	3/11	Transposable element protein, putative, MuDR
LOC_Os01g29750	3/11	SWIM zinc finger family protein
LOC_Os07g29840	2/11	SWIM zinc finger family protein
LOC_Os06g29050	2/11	transposon protein, putative, Mutator sub-class
LOC_Os06g22990	1/11	hypothetical protein
LOC_Os09g03180	1/11	transposon protein, putative, Mutator sub-class

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os10g07210	Os.14078.1.S1_s_at	11/11	10	+	3769863..3771545	Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210	Os.18511.1.S1_s_at	11/11	10	+	3769863..3771545	Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07210	Os.18511.1.S1_at	11/11	10	+	3769863..3771545	Hsp20/alpha crystallin family protein, expressed
LOC_Os10g07229	Os.15058.1.S1_at	11/11	10	+	3778087..3787975	Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229	OsAffx.30327.1.S1_at	11/11	10	+	3778087..3787975	Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229	Os.15058.2.S1_at	11/11	10	+	3778087..3787975	Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07229	Os.15058.3.S1_at	10/11	10	+	3778087..3787975	Alcohol dehydrogenase 2, putative, expressed
LOC_Os10g07248	Os.41695.3.S1_x_at	11/11	10	+	3795355..3807014	transposon protein, putative, Mutator sub-class
LOC_Os10g07248	Os.41695.15.S1_s_at	11/11	10	+	3795355..3807014	transposon protein, putative, Mutator sub-class
LOC_Os10g07248	Os.41695.2.S1_x_at	9/11	10	+	3795355..3807014	transposon protein, putative, Mutator sub-class
LOC_Os10g07248	Os.41695.5.S1_x_at	8/11	10	+	3795355..3807014	transposon protein, putative, Mutator sub-class
LOC_Os10g07248	Os.41695.4.S1_x_at	1/11	10	+	3795355..3807014	transposon protein, putative, Mutator sub-class
LOC_Os10g07270	Os.14909.2.S1_at	11/11	10	+	3815670..3825587	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270	Os.47414.1.A1_s_at	11/11	10	+	3815670..3825587	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270	Os.14909.3.S1_x_at	11/11	10	+	3815670..3825587	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07270	Os.14909.1.S1_at	11/11	10	+	3815670..3825587	Ubiquitin carboxyl-terminal hydrolase family protein, expressed
LOC_Os10g07280	NA	NA	10	+	3829132..3829431	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0009626	biological_process	hypersensitive response
GO:0019897	cellular_component	extrinsic to plasma membrane
GO:0000166	molecular_function	nucleotide binding
GO:0004722	molecular_function	protein serine/threonine phosphatase activity
GO:0005515	molecular_function	protein binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.41695.3.S1_x_at--964--159	35	Chr11:8214486..8214510 (25 bp)	AGCTCCTCAGGAGTGTGAATGAAAT	LOC_Os11g14590
Os.41695.3.S1_x_at--887--759	3	Chr10:3805893..3805917 (25 bp)	GGGCATACCCTCCAAGCTCCGAGGG	LOC_Os10g07248
Os.41695.3.S1_x_at--804--329	32	Chr11:8214657..8214681 (25 bp)	CAAAGGTGCCGGAAACTTGCAGCAA	LOC_Os11g14590
Os.41695.3.S1_x_at--43--341	34	Chr11:8214676..8214700 (25 bp)	CAGCAAGATTAGGTTGCAGGTCGGT	LOC_Os11g14590
Os.41695.3.S1_x_at--688--943	34	Chr11:8214696..8214720 (25 bp)	TCGGTTGGATTGGACGACGTGTACC	LOC_Os11g14590
Os.41695.3.S1_x_at--673--735	26	Chr10:8620497..8620521 (25 bp)	GTGAAGGAGTTGGTGGCTCGTCGTC	LOC_Os10g17710
Os.41695.3.S1_x_at--368--379	27	Chr10:8620513..8620537 (25 bp)	CTCGTCGTCGTCACGCATTAAGCAA	LOC_Os10g17710
Os.41695.3.S1_x_at--1082--719	24	Chr10:3806198..3806222 (25 bp)	GTCGTCGTCACGCATTAAGCAAGGG	LOC_Os10g07248
Os.41695.3.S1_x_at--1067--603	21	Chr10:3806313..3806337 (25 bp)	GAGATAGACATGTCACAGCTTCCCG	LOC_Os10g07248
Os.41695.3.S1_x_at--685--29	20	Chr10:3806316..3806340 (25 bp)	ATAGACATGTCACAGCTTCCCGACG	LOC_Os10g07248
Os.41695.3.S1_x_at--417--811	33	Chr11:8214970..8214994 (25 bp)	GGACGCAACCCACGCAATACAACTT	LOC_Os11g14590

Target Sequence

AGCTCCTCAGGAGTGTGAATGAAATGGGGCATACCCTCCAAGCTCCGAGGGGTGGTGAGGACACGGAGAACACACTCCGC
AATGTTTTAGAGAAAGTTCGTCAAAGGTGCCGGAAACTTGCAGCAAGATTAGGTTGCAGGTCGGTTGGATTGGACGACGT
GTACCAACCGGGGAGACTACCACCACCACTACCTCAATCCGCGCGTCCAAGTATCGCTCGACACTCCATCAGGATAGAAG
AGCGTGAAGGAGTTGGTGGCTCGTCGTCGTCACGCATTAAGCAAGGGAGGGGAAAGGGGAAGGCGCCGGCTCCACCTAGC
GACGACGATGACGACGAGGACGAGGAGGATGAGGACTACGTCGCACCAGACGCCGAGGAGATAGACATGTCACAGCTTCC
CGACGCGCCTCAGGGGACGCAACCCACGCAATACAACTT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis