Browse Element(s) Details


Os.41695.4.S1_x_at

Description gb:NM_184821.1
DB_XREF= gi:34896731
GEN=OSJNBb0042N11.11
TID=Os.41695.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41695 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative mutator-like transposase (OSJNBb0042N11.11), mRNA.
PROD=putative mutator-like transposase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3984011/11transposon protein, putative, Mutator sub-class
LOC_Os11g145905/11hypothetical protein
LOC_Os03g471305/11transposon protein, putative, Mutator sub-class
LOC_Os12g080804/11Transposable element protein, putative, MuDR
LOC_Os01g184704/11transposon protein, putative, Mutator sub-class
LOC_Os06g229904/11hypothetical protein
LOC_Os01g297503/11SWIM zinc finger family protein
LOC_Os07g470103/11SWIM zinc finger family protein
LOC_Os03g180603/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g080703/11transposon protein, putative, Mutator sub-class
LOC_Os07g298402/11SWIM zinc finger family protein
LOC_Os07g043602/11Transposable element protein, putative, MuDR
LOC_Os04g416902/11transposon protein, putative, Mutator sub-class
LOC_Os08g199702/11Transposable element protein, putative, MuDR
LOC_Os02g474802/11hypothetical protein
LOC_Os01g508001/11hypothetical protein
LOC_Os01g287401/11transposon protein, putative, Mutator sub-class
LOC_Os08g289901/11transposon protein, putative, Mutator sub-class
LOC_Os10g263601/11transposon protein, putative, Mutator sub-class
LOC_Os08g270001/11Zinc knuckle family protein
LOC_Os07g414301/11transposon protein, putative, Mutator sub-class
LOC_Os02g032401/11transposon protein, putative, Mutator sub-class
LOC_Os05g050901/11Transposable element protein, putative, MuDR
LOC_Os05g079201/11transposon protein, putative, Mutator sub-class
LOC_Os10g072481/11transposon protein, putative, Mutator sub-class
LOC_Os11g318301/11Transposable element protein, putative, MuDR
LOC_Os05g360601/11transposon protein, putative, Mutator sub-class
LOC_Os04g077841/11transposon protein, putative, Mutator sub-class
LOC_Os03g023701/11calcineurin-like phosphoesterase family protein, putative
LOC_Os04g234701/11transposon protein, putative, Mutator sub-class
LOC_Os07g104701/11Zinc knuckle family protein
LOC_Os04g125201/11transposon protein, putative, Mutator sub-class
LOC_Os10g271001/11hypothetical protein
LOC_Os11g392301/11hypothetical protein
LOC_Os12g295301/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g246301/11hypothetical protein
LOC_Os06g388901/11hypothetical protein
LOC_Os09g291801/11hypothetical protein
LOC_Os03g460801/11Transposable element protein, putative, MuDR
LOC_Os01g099601/11SWIM zinc finger family protein
LOC_Os04g054601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39780OsAffx.22686.1.S1_at11/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39780OsAffx.20729.1.S1_x_at1/113+22086638..22089735retrotransposon protein, putative, unclassified
LOC_Os03g39790OsAffx.10456.1.S1_at10/113+22090428..22092843retrotransposon protein, putative, unclassified
LOC_Os03g39820Os.45903.1.S1_at11/113+22102594..22104416expressed protein
LOC_Os03g39830Os.18384.1.S1_at11/113+22105006..22106227expressed protein
LOC_Os03g39840Os.41695.4.S1_x_at11/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39840Os.41695.15.S1_s_at2/113+22108226..22114252transposon protein, putative, Mutator sub-class
LOC_Os03g39850OsAffx.13256.1.S1_at11/113+22114876..22116121Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g39860Os.37594.2.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.2.S1_x_at11/113+22119282..22124546expressed protein
LOC_Os03g39860Os.37594.1.S1_at11/113+22119282..22124546expressed protein
LOC_Os03g39870NANA3+22126936..22127262hypothetical protein
LOC_Os03g39880Os.56311.1.S1_at11/113+22127740..22129574Zinc knuckle family protein, expressed
LOC_Os03g39890NANA3+22129958..22131740retrotransposon, putative, centromere-specific
LOC_Os03g39900OsAffx.10458.1.S1_at11/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39900Os.45088.1.A1_at8/113+22133882..22138659retrotransposon protein, putative, unclassified
LOC_Os03g39910Os.47130.1.S1_at11/113+22138826..22142570XH domain containing protein, expressed
LOC_Os03g39910Os.47130.4.A1_x_at5/113+22138826..22142570XH domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41695.4.S1_x_at--687--5191Chr03:22112296..22112425 (25 bp)
GAATTGGACAAGTACGACAGGGTGA
LOC_Os03g39840
Os.41695.4.S1_x_at--340--5291Chr03:22112492..22112798 (25 bp)
GAAGGAACGACAGAGAGCTCTTTAG
LOC_Os03g39840
Os.41695.4.S1_x_at--752--5891Chr03:22112788..22112812 (25 bp)
GAGCTCTTTAGGAGTGTGAACAAAA
LOC_Os03g39840
Os.41695.4.S1_x_at--914--10151Chr03:22113061..22113085 (25 bp)
TATCTCCGCGCGTACAAGTATCGCT
LOC_Os03g39840
Os.41695.4.S1_x_at--827--1453Chr11:8214803..8215122 (25 bp)
AGAAGTTGGTGATACACTCCGGGCT
LOC_Os11g14590
Os.41695.4.S1_x_at--1011--8615Chr11:8215108..8215128 (21 bp)
TGGTGATACACTCCGGGCTCGCAAG
LOC_Os11g14590
Os.41695.4.S1_x_at--41--21913Chr11:8215111..8215135 (25 bp)
ACACTCCGGGCTCGCAAGCTATTCG
LOC_Os11g14590
Os.41695.4.S1_x_at--491--94534Chr11:8215133..8215157 (25 bp)
TCGGCGCCAACGGAAGAAGTGATTT
LOC_Os11g14590
Os.41695.4.S1_x_at--674--69117Chr11:8215158..8215182 (25 bp)
GTATGAAGTTAATCTATTTGTTGGT
LOC_Os11g14590
Os.41695.4.S1_x_at--240--2116Chr08:11949134..11949424 (25 bp)
ATTTGTTGGTAGTATGACGGAGGCA
LOC_Os08g19970
Os.41695.4.S1_x_at--1100--1791Chr03:22113800..22113824 (25 bp)
ACCCTAGCGCCACAGTACGTGAGGG
LOC_Os03g39840
Target Sequence 
GAATTGGACAAGTACGACAGGGTGAGAACAAAGAAAGTGAAAGACTGGGGGCTAGAGCATAATAGATACATTGATGAATG
GAGGACAGCGGGAAGGAACGACAGAGAGCTCTTTAGGAGTGTGAACAAAATGGGGCATGCCCTCCAATCTTCGAGGGGTG
GTGAGGAAACGGAGAACACACTCCGCAATATCTTAGAGAAAGTTCGTCAAAGATGCCGGAAACTTGTTGCAAGATTAGGT
TGCGGGTCGGTTGGATTGGAAGACGTGTACCAACCGCGGAGAGTACCACCACCACTACCTCAATCCGCACCTATCTCCGC
GCGTACAAGTATCGCTCGACACTCCATCAGGATAGAAGAGCGTGAAGAAGTTGGTGATACACTCCGGGCTCGCAAGCTAT
TCGGCGCCAACGGAAGAAGTGATTTGTATGAAGTTAATCTATTTGTTGGTAGTATGACGGAGGCAGAGGGTGGTGCCAGC
CACCCTAGCGCCACAGTACGTGAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41695.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis