Browse Element(s) Details


Os.41695.5.S1_x_at

Description gb:NM_193945.1
DB_XREF= gi:34914973
GEN=OSJNBb0093M23.5
TID=Os.41695.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41695 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBb0093M23.5), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2874011/11transposon protein, putative, Mutator sub-class
LOC_Os04g1252010/11transposon protein, putative, Mutator sub-class
LOC_Os03g4608010/11Transposable element protein, putative, MuDR
LOC_Os05g2547010/11transposon protein, putative, Mutator sub-class
LOC_Os03g246309/11hypothetical protein
LOC_Os10g375609/11expressed protein
LOC_Os05g360609/11transposon protein, putative, Mutator sub-class
LOC_Os08g289909/11transposon protein, putative, Mutator sub-class
LOC_Os04g077849/11transposon protein, putative, Mutator sub-class
LOC_Os12g295309/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os07g414309/11transposon protein, putative, Mutator sub-class
LOC_Os05g050909/11Transposable element protein, putative, MuDR
LOC_Os07g460209/11transposon protein, putative, Mutator sub-class
LOC_Os07g104709/11Zinc knuckle family protein
LOC_Os11g318309/11Transposable element protein, putative, MuDR
LOC_Os01g099608/11SWIM zinc finger family protein
LOC_Os03g023708/11calcineurin-like phosphoesterase family protein, putative
LOC_Os06g080708/11transposon protein, putative, Mutator sub-class
LOC_Os01g297508/11SWIM zinc finger family protein
LOC_Os10g072488/11transposon protein, putative, Mutator sub-class
LOC_Os01g184708/11transposon protein, putative, Mutator sub-class
LOC_Os03g180607/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g263607/11transposon protein, putative, Mutator sub-class
LOC_Os04g234707/11transposon protein, putative, Mutator sub-class
LOC_Os05g079207/11transposon protein, putative, Mutator sub-class
LOC_Os11g392306/11hypothetical protein
LOC_Os11g145905/11hypothetical protein
LOC_Os03g471305/11transposon protein, putative, Mutator sub-class
LOC_Os02g474805/11hypothetical protein
LOC_Os10g177105/11calcineurin-like phosphoesterase family protein, putative
LOC_Os06g290505/11transposon protein, putative, Mutator sub-class
LOC_Os01g508004/11hypothetical protein
LOC_Os09g031804/11transposon protein, putative, Mutator sub-class
LOC_Os08g199704/11Transposable element protein, putative, MuDR
LOC_Os07g298403/11SWIM zinc finger family protein
LOC_Os06g388903/11hypothetical protein
LOC_Os09g291803/11hypothetical protein
LOC_Os12g080803/11Transposable element protein, putative, MuDR
LOC_Os02g032402/11transposon protein, putative, Mutator sub-class
LOC_Os08g270002/11Zinc knuckle family protein
LOC_Os02g302902/11SWIM zinc finger family protein
LOC_Os07g470102/11SWIM zinc finger family protein
LOC_Os04g054601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g28690Os.32272.1.S1_x_at11/111+16388813..16394523expressed protein
LOC_Os01g28690Os.32272.1.S1_s_at11/111+16388813..16394523expressed protein
LOC_Os01g28700OsAffx.21116.1.S1_at9/111+16398063..16398296hypothetical protein
LOC_Os01g28710NANA1+16406159..16406925hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_x_at10/111+16407486..16408674hypothetical protein
LOC_Os01g28720OsAffx.28601.3.S1_at8/111+16407486..16408674hypothetical protein
LOC_Os01g28730OsAffx.23435.1.S1_at11/111+16413616..16415538serine/threonine protein kinase, putative, expressed
LOC_Os01g28740Os.41695.5.S1_x_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.15.S1_s_at11/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.2.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.3.S1_x_at10/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28740Os.41695.4.S1_x_at1/111+16416430..16421986transposon protein, putative, Mutator sub-class
LOC_Os01g28750OsAffx.23436.1.S1_at11/111+16431611..16433932hypothetical protein
LOC_Os01g28760OsAffx.4856.1.S1_x_at1/111+16435326..16438787retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g28770OsAffx.28887.2.S1_x_at2/111+16440198..16441465hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.41695.5.S1_x_at--652--35727Chr11:8214303..8214327 (25 bp)
CATAGAGGATGACCGCGACTCCGAT
LOC_Os11g14590
Os.41695.5.S1_x_at--361--3815Chr06:3904128..3904152 (25 bp)
CTCCGATGAGGGACGGAATCCCTAT
LOC_Os06g08070
Os.41695.5.S1_x_at--78--82133Chr10:8620034..8620058 (25 bp)
GGAATCCCTATGATGTCCGGACTAG
LOC_Os10g17710
Os.41695.5.S1_x_at--759--7333Chr10:8620046..8620070 (25 bp)
ATGTCCGGACTAGAGTTGGATATCA
LOC_Os10g17710
Os.41695.5.S1_x_at--515--56530Chr11:8214394..8214494 (25 bp)
GACAGAGTCTCGAGAGAGCTCCTCA
LOC_Os11g14590
Os.41695.5.S1_x_at--277--11533Chr11:8214479..8214499 (21 bp)
AGTCTCGAGAGAGCTCCTCAGGAGT
LOC_Os11g14590
Os.41695.5.S1_x_at--803--32932Chr11:8214657..8214681 (25 bp)
CAAAGGTGCCGGAAACTTGCAGCAA
LOC_Os11g14590
Os.41695.5.S1_x_at--672--73526Chr10:8620497..8620521 (25 bp)
GTGAAGGAGTTGGTGGCTCGTCGTC
LOC_Os10g17710
Os.41695.5.S1_x_at--495--94124Chr10:8620514..8620538 (25 bp)
TCGTCGTCGTCACGCATTAAGCAAG
LOC_Os10g17710
Os.41695.5.S1_x_at--958--40718Chr10:3806314..3806333 (20 bp)
CGAGAAGATAGACATGTCACAGCTT
LOC_Os10g07248
Os.41695.5.S1_x_at--416--81133Chr11:8214970..8214994 (25 bp)
GGACGCAACCCACGCAATACAACTT
LOC_Os11g14590
Target Sequence
CATAGAGGATGACCGCGACTCCGATGAGGGACGGAATCCCTATGATGTCCGGACTAGAGTTGGATATCAAATGGAGCACG
CCCCACTTAGAGACAGAGTCTCGAGAGAGCTCCTCAGGAGTGTGAATGAAATGGGGCATGCCCTCCAAGCTCCGAGGGGT
GATGAGGACACGGAGAACACGCTCCGCAATGTTTTAGAGAAAGTTCGTCAAAGGTGCCGGAAACTTGCAGCAAGATTAGG
TTGCAGGTCGGTTGGATTGGACGACGTGTACCAACCGGGGAGACTACCACCACCACTACCTCAATCCGCGCGTCCAAGTA
CTGCTCGACACTCTATCAGGATAGAAGAGCGTGAAGGAGTTGGTGGCTCGTCGTCGTCACGCATTAAGCAAGGGAGGGGA
AAGGGGAAGGCGCCGGCTCCACCTAGCGACGACGATGACGATGAGGACGAGGAGGATGAGGACTACGTCGCACCAGACGC
CGAGAAGATAGACATGTCACAGCTTCCCGACGCGCCTCAGGGGACGCAACCCACGCAATACAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41695.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis