Browse Element(s) Details


Os.45981.1.S1_at

Description gb:AK121086.1
DB_XREF= gi:37990709
TID=Os.45981.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.45981 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1075D06.2 (B1075D06.2), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064M06, full insert sequence.
FL= gb:AK121086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3306011/11HEAT repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g33030Os.4676.1.S1_at10/111+18467618..18469727Brix domain containing protein, expressed
LOC_Os01g33040Os.32739.1.S1_at11/111+18477785..18484690kinesin heavy chain, putative, expressed
LOC_Os01g33050Os.2120.1.S1_a_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.2.S1_x_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33050Os.2120.1.S1_at11/111+18485498..18490372ribosome biogenesis protein RLP24, putative, expressed
LOC_Os01g33060Os.45981.1.S1_at11/111+18490755..18500776HEAT repeat family protein, expressed
LOC_Os01g33070NANA1+18503381..18504722pentatricopeptide, putative
LOC_Os01g33080Os.40687.1.S1_at11/111+18513831..18520220Fimbrin-like protein 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.45981.1.S1_at--965--5811Chr01:18499835..18499859 (25 bp)
GACCCTGCACACAAGGAAGCACTAG
LOC_Os01g33060
Os.45981.1.S1_at--97--8071Chr01:18499916..18499940 (25 bp)
GGAGCACATCTTGGGATTGCATCAT
LOC_Os01g33060
Os.45981.1.S1_at--1148--411Chr01:18499936..18499960 (25 bp)
ATCATCGATGAGCAGCTTCTTTGGT
LOC_Os01g33060
Os.45981.1.S1_at--389--7391Chr01:18499959..18499983 (25 bp)
GTGAGAGCAGCCTCCTTGTGAAGAA
LOC_Os01g33060
Os.45981.1.S1_at--987--5491Chr01:18499994..18500018 (25 bp)
GAACAACATGATACTGCTGCCACGA
LOC_Os01g33060
Os.45981.1.S1_at--239--10251Chr01:18500063..18500087 (25 bp)
TTTGGTCGTATAATGCTGGGTGGTT
LOC_Os01g33060
Os.45981.1.S1_at--8--2091Chr01:18500150..18500174 (25 bp)
ACATGCCCAGTTGTTAATTCTTCAT
LOC_Os01g33060
Os.45981.1.S1_at--227--4791Chr01:18500186..18500210 (25 bp)
GCTCCATTTTCTCTGGTAACATGTG
LOC_Os01g33060
Os.45981.1.S1_at--68--7331Chr01:18500208..18500232 (25 bp)
GTGCTTTTTCACAACCATCAAGGTG
LOC_Os01g33060
Os.45981.1.S1_at--354--2451Chr01:18500283..18500307 (25 bp)
AAAATACATTTTCCGTTGCTGAGAG
LOC_Os01g33060
Os.45981.1.S1_at--295--7031Chr01:18500329..18500353 (25 bp)
GTAATCCTAGGTCAAACTTTCTGTA
LOC_Os01g33060
Target Sequence 
GACCCTGCACACAAGGAAGCACTAGAAGTTATAGCCCGCGAAAGGTCGGGAGGTAAACTTGAGAGCCTTGGCAAGGTAAT
GGGAGCACATCTTGGGATTGCATCATCGATGAGCAGCTTCTTTGGTGAGAGCAGCCTCCTTGTGAAGAAAGAGAGCGGGG
AACAACATGATACTGCTGCCACGACCCCCTCTCAGCCTACCCCACAAACTCAGCAAGAGAACACAAGGTTTGGTCGTATA
ATGCTGGGTGGTTTTGGAGATATGTTACGAGGCAAAGCAAAAGGCAGCGATGAGNCCCAGTTAAAATTTAACAAATACAT
GCCCAGTTGTTAATTCTTCATATTTTTTTCCAGCTCCATTTTCTCTGGTAACATGTGCTTTTTCACAACCATCAAGGTGG
AAATTCTTTTTATTCATTGTTGGTAAGGCGGGGAGGTCACGGTAGACAGAAAATACATTTTCCGTTGCTGAGAGTAAAGC
ATACATATTTTTGTTGTAATCCTAGGTCAAACTTTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.45981.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis