Browse Element(s) Details


Os.46312.1.S1_a_at

Description gb:AY423716.1
DB_XREF= gi:37694043
TID=Os.46312.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.46312 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) homeodomain leucine-zipper protein Hox9 mRNA, complete cds.
PROD=homeodomain leucine-zipper protein Hox9
FL= gb:AY423716.1 gb:AK102603.1 gb:AK102830.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3396011/11rolled leaf1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33950Os.46808.2.S1_x_at8/1110+17733044..17734149hypothetical protein
LOC_Os10g33952NANA10+17748315..17748492NA
LOC_Os10g33954NANA10+17751297..17751602hypothetical protein
LOC_Os10g33960Os.46312.1.S1_a_at11/1110+17756147..17763107rolled leaf1, putative, expressed
LOC_Os10g33960Os.39943.1.S1_s_at1/1110+17756147..17763107rolled leaf1, putative, expressed
LOC_Os10g33970Os.3114.1.S1_at10/1110+17773282..17779372Double-stranded RNA binding motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0008284biological_processpositive regulation of cell proliferation
GO:0009733biological_processresponse to auxin stimulus
GO:0009855biological_processdetermination of bilateral symmetry
GO:0009887biological_processorgan morphogenesis
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009955biological_processadaxial/abaxial pattern formation
GO:0009956biological_processradial pattern formation
GO:0009965biological_processleaf morphogenesis
GO:0010014biological_processmeristem initiation
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010072biological_processprimary shoot apical meristem specification
GO:0010073biological_processmeristem maintenance
GO:0010075biological_processregulation of meristem size
GO:0010087biological_processvascular tissue development (sensu Tracheophyta)
GO:0010089biological_processxylem histogenesis
GO:0030154biological_processcell differentiation
GO:0045597biological_processpositive regulation of cell differentiation
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46312.1.S1_a_at--29--5271Chr10:17762419..17762443 (25 bp)
GAAGGCCCTATACAACGAGATCCCG
LOC_Os10g33960
Os.46312.1.S1_a_at--911--1751Chr10:17762619..17762643 (25 bp)
ACCTGCCTGGTGGAGTGTGCTTGTC
LOC_Os10g33960
Os.46312.1.S1_a_at--621--10291Chr10:17762661..17762685 (25 bp)
TTTCTTTCGAGCAAGCTGTAGCATG
LOC_Os10g33960
Os.46312.1.S1_a_at--192--10611Chr10:17762747..17762771 (25 bp)
TTCGTGTGACCCAAAATCCAATCCA
LOC_Os10g33960
Os.46312.1.S1_a_at--586--1731Chr10:17762771..17762795 (25 bp)
ACCATGCTCGCAGTCATCGTCGTTG
LOC_Os10g33960
Os.46312.1.S1_a_at--412--511Chr10:17762786..17762810 (25 bp)
ATCGTCGTTGTCGTCAGATCTCCAT
LOC_Os10g33960
Os.46312.1.S1_a_at--808--6411Chr10:17762802..17762826 (25 bp)
GATCTCCATTTTTTGCAATCTCTGT
LOC_Os10g33960
Os.46312.1.S1_a_at--189--6031Chr10:17762831..17762855 (25 bp)
GAGAGGACACCAAACCAACCACAAA
LOC_Os10g33960
Os.46312.1.S1_a_at--523--1711Chr10:17762848..17762872 (25 bp)
ACCACAAACCTGTCAGCTGTTAGCT
LOC_Os10g33960
Os.46312.1.S1_a_at--358--2431Chr10:17762908..17762932 (25 bp)
AAAATGCTGCCGGTGCCTGTAAAGA
LOC_Os10g33960
Os.46312.1.S1_a_at--863--2191Chr10:17762951..17762975 (25 bp)
AAATTTGGGCGCGTTTTGCACTAAT
LOC_Os10g33960
Target Sequence 
GAAGGCCCTATACAACGAGATCCCGAAATTGATGGAACAGGGTTACGTGTACCTGCCTGGTGGAGTGTGCTTGTCCGGGA
TGGGGCGCCATGTTTCTTTCGAGCAAGCTGTAGCATGGAAGGTGCTCGGAGAAGACAACAATGTGCACTGCCTCGCCTTC
TGCTTCGTCAACTGGTCCTTCGTGTGACCCAAAATCCAATCCACCATGCTCGCAGTCATCGTCGTTGTCGTCAGATCTCC
ATTTTTTGCAATCTCTGTAGAAGAGAGGACACCAAACCAACCACAAACCTGTCAGCTGTTAGCTAATGATTCTACTAGCT
TTTCTAGATCTTTGAAGGCAAAATGCTGCCGGTGCCTGTAAAGAGTGTGTGCGTGCGTGTGTAAATTTGGGCGCGTTTTG
CACTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46312.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis