Browse Element(s) Details


Os.46867.2.S1_x_at

Description gb:NM_197034.1
DB_XREF= gi:37535427
TID=Os.46867.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46867 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative aquaporin (OSJNBa0093B11.9), mRNA.
PROD=putative aquaporin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3400011/11aquaporin PIP2.4, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33980NANA10+17791154..17791675Pyruvate decarboxylase isozyme 3, putative
LOC_Os10g33990NANA10+17800160..17800743expressed protein
LOC_Os10g34000Os.46867.2.S1_x_at11/1110+17811393..17813051aquaporin PIP2.4, putative
LOC_Os10g34010NANA10+17815487..17815951hypothetical protein
LOC_Os10g34020Os.39228.1.S1_at11/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34020Os.46635.1.S1_x_at1/1110+17816507..17820189Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os10g34030Os.46663.1.S1_x_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed
LOC_Os10g34030Os.50626.1.S1_at11/1110+17821105..17827053Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006833biological_processwater transport
GO:0009651biological_processresponse to salt stress
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0015250molecular_functionwater channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46867.2.S1_x_at--61--5811Chr10:17811898..17811922 (25 bp)
GACGCTGCTGTTCCTGTACGTGACG
LOC_Os10g34000
Os.46867.2.S1_x_at--1114--4471Chr10:17812271..17812295 (25 bp)
GCCGGCACGTTCGTGCTCGTGTACA
LOC_Os10g34000
Os.46867.2.S1_x_at--741--71Chr10:17812448..17812472 (25 bp)
ATTGCCCATCGGTTTCGCGGTGTTC
LOC_Os10g34000
Os.46867.2.S1_x_at--740--10291Chr10:17812460..17812484 (25 bp)
TTTCGCGGTGTTCGTGGTGCACCTC
LOC_Os10g34000
Os.46867.2.S1_x_at--98--9411Chr10:17812543..17812567 (25 bp)
TCGTCTACAACCAGCCCAATGCTTG
LOC_Os10g34000
Os.46867.2.S1_x_at--445--3011Chr10:17812560..17812941 (25 bp)
AATGCTTGGCACGATCAGTGGATCT
LOC_Os10g34000
Os.46867.2.S1_x_at--664--1091Chr10:17812933..17812957 (25 bp)
AGTGGATCTTCTGGGTAGGGCCTCT
LOC_Os10g34000
Os.46867.2.S1_x_at--1134--10051Chr10:17812948..17812972 (25 bp)
TAGGGCCTCTTGTCGGGTCCGCCAT
LOC_Os10g34000
Os.46867.2.S1_x_at--720--71Chr10:17812971..17812995 (25 bp)
ATTGCGACGCTATACCACGAGCATG
LOC_Os10g34000
Os.46867.2.S1_x_at--76--9991Chr10:17812983..17813007 (25 bp)
TACCACGAGCATGTGCTGAGGGCGA
LOC_Os10g34000
Os.46867.2.S1_x_at--1128--9111Chr10:17812996..17813020 (25 bp)
TGCTGAGGGCGAGTACTCTCAAGGC
LOC_Os10g34000
Target Sequence 
GACGCTGCTGTTCCTGTACGTGACGGTGGCCACGTGCACCGCCGGCGTGTCCGGCGGGCACGTGAACCCGGCGGTCACGC
TCGGGCTGCTCGTCGCGAGGAAGGTGACGCTGCTCCGCGCCGCGCTCTACGTCGCCGCGCAGTGCCTCGGCGCCGGCCTC
GTCCGGGCGCTCAACTCGGCCCACTTCGCGCGGCACGGCGGCGGCGCCAACGTCGTCGGCGACGGCTACTCCAAGGGCGC
CGGGCTCGCCGCCGAGGTCGCCGGCACGTTCGTGCTCGTGTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAGCGCGC
GCGACAGCCACATCCCGGTGTTGGCGCCATTGCCCATCGGTTTCGCGGTGTTCGTGGTGCACCTCGCCACCATCCCGATC
ACCGGCACGGGCATCAATCCGGCGAGGAGCTTCGGCGCCGCCGTCGTCTACAACCAGCCCAATGCTTGGCACGATCAGTG
GATCTTCTGGGTAGGGCCTCTTGTCGGGTCCGCCATTGCGACGCTATACCACGAGCATGTGCTGAGGGCGAGTACTCTCA
AGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46867.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis